Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DYQ48_RS20560 Genome accession   NZ_CP031607
Coordinates   4611742..4613262 (+) Length   506 a.a.
NCBI ID   WP_095574997.1    Uniprot ID   -
Organism   Xanthomonas hortorum strain VT106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4606742..4618262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYQ48_RS20540 (DYQ48_20550) - 4607483..4608157 (+) 675 WP_074056495.1 RIO1 family regulatory kinase/ATPase -
  DYQ48_RS20545 (DYQ48_20555) - 4608508..4610481 (-) 1974 WP_095574996.1 beta-N-acetylglucosaminidase domain-containing protein -
  DYQ48_RS20550 (DYQ48_20560) - 4610907..4611281 (-) 375 WP_197970279.1 P-II family nitrogen regulator -
  DYQ48_RS20555 (DYQ48_20565) - 4611435..4611725 (+) 291 WP_074056493.1 accessory factor UbiK family protein -
  DYQ48_RS20560 (DYQ48_20570) comM 4611742..4613262 (+) 1521 WP_095574997.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DYQ48_RS20565 (DYQ48_20575) - 4613352..4613861 (+) 510 WP_187433702.1 lipocalin family protein -
  DYQ48_RS20575 (DYQ48_20585) - 4614399..4614575 (-) 177 WP_006449000.1 hypothetical protein -
  DYQ48_RS20580 (DYQ48_20590) - 4614960..4616522 (+) 1563 WP_006449001.1 EAL domain-containing protein -
  DYQ48_RS20585 (DYQ48_20595) - 4616775..4617899 (-) 1125 WP_074056491.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53826.65 Da        Isoelectric Point: 8.1604

>NTDB_id=307896 DYQ48_RS20560 WP_095574997.1 4611742..4613262(+) (comM) [Xanthomonas hortorum strain VT106]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGTQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDTIVRYRSRISGPLLDRIDLHVEVPRLPPQALRNGN
VGEDSASVRTRVVAARVLQLARAGVPNAQLDQAQTDHHCRLRNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATHHLTEAIGYRKLDRAVGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=307896 DYQ48_RS20560 WP_095574997.1 4611742..4613262(+) (comM) [Xanthomonas hortorum strain VT106]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTAGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCGGTGCGCGAGTCGCGCGAACGCGTGCGTGCCGCGCTGC
TATGCGCACAGTTCGAATTCCCCGCGCGGCGCATCACCATCAATCTGGCGCCGGCCGATTTACCCAAGGAAGGCGGCCGT
TTCGATCTGCCGATCGCACTCGGCATCCTGGCCGCCAGCGGGCAGATCGACCGGCAGGCCCTGGCCGAGTACGAATTTCT
CGGCGAACTCGCCCTCACCGGCGAATTGCGCGGTGTCGATGGCGTGCTGCCCGCCGCCCTGGCAGCCGCGCAGGCCGGCC
GCCGCCTGATCGTGCCGCTGGCCAACGGTGCCGAGGCCGCCATCGCCGGCCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGTGCCACGCTCAATGGCACCCAGAAGGCGCCCGCCGCCGAACTGGCGGTGCAGGCTCTCGGCGCACGCGC
CCTGCCCGACATGGCCGACGTGCGCGGCCAACCGCATGCCCGCCGCGCGCTGGAAATCGCTGCCGCTGGCGGTCACCATC
TTTTGCTGGTTGGTAGCCCTGGCTGCGGCAAGACTCTGCTTGCCTCGCGCCTGCCCGGCCTGCTGCCGGAAGCCAGCGAG
GCCGAAGCGCTGGAAACCGCTGCCATTACCTCCATCAGCGGTCGCGGACTGGATCTTGCGCGCTGGCGGCAACGCCCCTA
TCGGGCACCGCATCACACTGCCAGCGCGGTCGCCTTGGTGGGCGGCGGCACACATCCACGTCCTGGCGAGATTTCGCTGG
CCCACAACGGCGTGCTGTTTCTGGACGAATTGCCCGAGTGGCAACGCCAAACGCTGGAAGTGCTGCGCGAACCGCTCGAA
TCGGGCCTGGTCACCATCTCACGCGCCGCGCGCAGTGTGGATTTCCCGGCAAGATTTCAATTGGTCGCCGCAATGAATCC
ATGCCCGTGCGGGTGGGCCGGCGATGGCAGTGGGCGTTGTCGTTGCAGCAGCGACACCATCGTCCGTTATCGCAGCCGGA
TCTCCGGGCCGCTGCTGGACCGCATCGATCTGCACGTCGAAGTTCCGCGCCTGCCACCGCAGGCCCTGCGCAACGGCAAC
GTCGGCGAGGACAGCGCCAGCGTGCGCACCCGCGTAGTCGCAGCACGCGTCCTGCAACTGGCACGTGCCGGCGTGCCCAA
CGCACAACTAGACCAGGCGCAAACCGATCACCACTGCCGCCTGCGCAACGACGATCAGTTGCTGCTGGAACGCGCGATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GTCATTGCCACCCACCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGCGCGGTGGGTACAGCAAGCGCGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.719

100

0.567
  comM Haemophilus influenzae Rd KW20

56.04

99.802

0.559
  comM Glaesserella parasuis strain SC1401

55.248

99.802

0.551
  comM Vibrio campbellii strain DS40M4

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.295

99.012

0.518
  comM Legionella pneumophila strain ERS1305867

52.295

99.012

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.654

100

0.468

Multiple sequence alignment