Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DXT74_RS06690 Genome accession   NZ_CP031514
Coordinates   1418971..1420479 (+) Length   502 a.a.
NCBI ID   WP_081555563.1    Uniprot ID   A0A1W0CYX5
Organism   Chromobacterium sp. Rain0013     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413971..1425479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXT74_RS06660 (DXT74_06615) - 1414313..1415077 (+) 765 WP_019103448.1 cytochrome c1 -
  DXT74_RS06665 (DXT74_06620) - 1415229..1415831 (+) 603 WP_039756141.1 glutathione S-transferase N-terminal domain-containing protein -
  DXT74_RS06670 (DXT74_06625) - 1415841..1416281 (+) 441 WP_043641305.1 ClpXP protease specificity-enhancing factor -
  DXT74_RS06675 (DXT74_06630) - 1416687..1417999 (-) 1313 Protein_1308 ammonium transporter -
  DXT74_RS06680 (DXT74_06635) glnK 1418029..1418367 (-) 339 WP_043591378.1 P-II family nitrogen regulator -
  DXT74_RS06685 (DXT74_06640) - 1418678..1418965 (+) 288 WP_043637957.1 accessory factor UbiK family protein -
  DXT74_RS06690 (DXT74_06645) comM 1418971..1420479 (+) 1509 WP_081555563.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DXT74_RS06695 (DXT74_06650) - 1420629..1421276 (+) 648 WP_231138291.1 SPOR domain-containing protein -
  DXT74_RS06700 (DXT74_06655) - 1421304..1421915 (+) 612 WP_114153195.1 thiol:disulfide interchange protein DsbA/DsbL -
  DXT74_RS06705 (DXT74_06660) - 1421999..1422820 (+) 822 WP_081555592.1 undecaprenyl-diphosphate phosphatase -
  DXT74_RS06715 (DXT74_06670) purB 1423093..1424463 (-) 1371 WP_194427603.1 adenylosuccinate lyase -
  DXT74_RS06720 (DXT74_06675) - 1424529..1425425 (-) 897 WP_114153193.1 RimK family alpha-L-glutamate ligase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53391.59 Da        Isoelectric Point: 7.1162

>NTDB_id=307246 DXT74_RS06690 WP_081555563.1 1418971..1420479(+) (comM) [Chromobacterium sp. Rain0013]
MALAVVASRALAGVDAPEVAVEVHLANGLPAFTIVGLPDLEVRESRERVRAAILTSGFEFPARRITVNLAPADLPKDSGR
FDLPIAIGILVASGQVRCPKLAEYEIAGELALTGALRPVRGALAMACKTREAGRAFILPVASAREAAVLEGMPLYGVSSL
VEACAFLNGLSELEPYRQEGGPSRSLPDYLDLLDIKGQSLARHALEVAAAGRHSLLLIGPPGTGKSMLAARLPGILPGMP
DEEALESAAVRSLGTDGFALDDWGVRPFRAPHHTASAVALVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
EAGVIHISRAARQASFPARFQLIAAMNPCPCGYLGHFSGKCRCTPEQVGRYRGKISGPLLDRIDLHVEVQSLPAEALVDG
AAGEPSALVRERVESAYRRQLARQGKANAGLSGAELEALGDFHAEGLALLRQVLDKIGLSARSYHRILRVSRTIADLQGQ
AMVMREHVLQAIQLRRAAMPNG

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=307246 DXT74_RS06690 WP_081555563.1 1418971..1420479(+) (comM) [Chromobacterium sp. Rain0013]
ATGGCGCTGGCCGTGGTTGCAAGCCGGGCGCTGGCCGGAGTGGACGCGCCTGAGGTTGCGGTGGAAGTGCATTTGGCCAA
CGGCTTGCCCGCTTTCACCATTGTCGGCTTGCCTGATCTGGAGGTGAGGGAAAGCCGGGAGCGGGTCCGCGCGGCAATCT
TGACCTCTGGTTTTGAGTTCCCGGCCCGGCGCATCACCGTCAACCTGGCCCCGGCCGATCTTCCCAAAGACTCCGGCCGT
TTTGACCTGCCCATCGCCATTGGCATTCTTGTTGCCAGCGGACAGGTGCGTTGTCCCAAGTTGGCGGAATATGAAATTGC
CGGAGAGCTGGCCTTGACCGGGGCTTTGCGGCCGGTGCGCGGGGCCTTGGCGATGGCGTGCAAGACGAGGGAAGCGGGGC
GCGCCTTCATCTTGCCGGTAGCCAGCGCCAGGGAGGCTGCCGTGCTTGAGGGCATGCCATTATATGGCGTGAGCAGCCTG
GTTGAGGCCTGCGCCTTTCTCAACGGTCTCTCCGAGCTGGAGCCGTATCGACAAGAGGGTGGCCCATCCCGCTCGCTGCC
TGATTACCTTGATCTGTTGGATATCAAAGGCCAGTCCTTAGCGCGCCATGCGTTGGAAGTGGCTGCGGCCGGACGGCATA
GCCTCTTGTTGATCGGGCCTCCCGGCACAGGTAAATCCATGTTGGCCGCCCGCCTGCCCGGCATCTTGCCCGGCATGCCG
GACGAAGAGGCGCTGGAAAGCGCGGCCGTGCGTTCTTTGGGGACCGATGGCTTCGCCCTGGACGATTGGGGCGTAAGGCC
TTTCCGTGCCCCGCACCATACCGCGTCCGCGGTGGCGTTGGTGGGTGGAGGCAGTGACCCCCGGCCAGGGGAAATTAGCC
TGGCGCATCATGGCGTTTTGTTTCTGGACGAATTGCCGGAGTTCGATCGCAAAGTGCTGGAGGTCTTGCGCGAGCCGCTG
GAGGCCGGCGTGATCCACATCTCGCGCGCCGCGCGCCAAGCCAGTTTTCCCGCGCGATTTCAGCTGATTGCGGCAATGAA
TCCCTGCCCGTGTGGCTATCTTGGGCATTTCAGCGGAAAATGCCGGTGCACGCCCGAGCAAGTGGGGCGCTATCGAGGTA
AAATCTCCGGTCCCTTGTTGGATCGCATCGATTTGCATGTTGAAGTGCAGTCCTTGCCTGCCGAGGCGTTGGTGGATGGG
GCCGCCGGCGAGCCCAGCGCTTTGGTGCGTGAGCGGGTGGAGTCGGCGTATCGTCGACAATTGGCTAGGCAAGGAAAGGC
GAATGCGGGCTTGAGCGGGGCGGAGCTGGAGGCGCTTGGCGATTTTCACGCCGAAGGGCTGGCATTATTGCGGCAAGTTT
TGGACAAGATCGGCTTGTCGGCGCGCAGTTATCATCGGATACTTCGGGTTTCCAGAACCATTGCCGATTTACAGGGTCAG
GCTATGGTCATGCGGGAGCATGTGTTGCAGGCGATTCAATTACGACGCGCGGCAATGCCTAATGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W0CYX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.314

99.004

0.518
  comM Vibrio cholerae strain A1552

51.911

99.004

0.514
  comM Haemophilus influenzae Rd KW20

51.4

99.602

0.512
  comM Glaesserella parasuis strain SC1401

50.898

99.801

0.508
  comM Legionella pneumophila str. Paris

48.805

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.805

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.129

100

0.452

Multiple sequence alignment