Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXX82_RS05855 Genome accession   NZ_CP031477
Coordinates   1196316..1196783 (-) Length   155 a.a.
NCBI ID   WP_115911974.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1191316..1201783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS05840 - 1191336..1193375 (-) 2040 WP_109082962.1 integrase -
  DXX82_RS05845 - 1193378..1194898 (-) 1521 WP_201762256.1 site-specific integrase -
  DXX82_RS05850 - 1194885..1196165 (-) 1281 WP_109082998.1 site-specific integrase -
  DXX82_RS05855 ssb 1196316..1196783 (-) 468 WP_115911974.1 single-stranded DNA-binding protein Machinery gene
  DXX82_RS05860 uvrA 1196946..1199777 (+) 2832 WP_115911976.1 excinuclease ABC subunit UvrA -
  DXX82_RS05865 - 1199892..1201001 (+) 1110 WP_115911978.1 alpha/beta fold hydrolase -
  DXX82_RS10445 - 1201206..1201391 (-) 186 Protein_1115 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17267.16 Da        Isoelectric Point: 5.2630

>NTDB_id=307132 DXX82_RS05855 WP_115911974.1 1196316..1196783(-) (ssb) [Haemophilus parainfluenzae strain M27794]
MAGINKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVLYRRLAEIAGQYLRKGSQVYVEG
RLKTRKWQDNNGQDRYTTEIQGDNLQMLGGRNQEMGGYAPAQSATQPSYQSRPAQSAPAPQAEPPMDAFDDNIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=307132 DXX82_RS05855 WP_115911974.1 1196316..1196783(-) (ssb) [Haemophilus parainfluenzae strain M27794]
ATGGCAGGTATTAATAAAGTAATCATCGTGGGTAATTTAGGTAATGATCCTGAAATCCGCACGATGCCAAATGGCGAAGC
GGTAGCCAATATCAGCGTGGCAACAAGTGAAAGCTGGACAGATAAAAACACGGGCGAACGTCGTGAAGTGACAGAATGGC
ACCGCATCGTGTTATATCGTCGTTTAGCGGAAATAGCGGGTCAATACTTACGCAAAGGTTCACAAGTTTATGTTGAAGGT
CGTTTAAAAACCCGCAAATGGCAAGATAACAACGGCCAAGATCGTTACACCACTGAAATCCAAGGTGATAACTTACAAAT
GTTAGGTGGTCGTAATCAAGAGATGGGCGGTTATGCACCTGCACAATCAGCAACACAACCAAGCTATCAATCTCGTCCAG
CACAATCTGCACCAGCACCACAAGCTGAGCCACCAATGGACGCATTTGATGACAACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65.556

100

0.761
  ssb Vibrio cholerae strain A1552

58.857

100

0.665
  ssb Neisseria meningitidis MC58

51.445

100

0.574
  ssb Neisseria gonorrhoeae MS11

51.445

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

33.721

100

0.374

Multiple sequence alignment