Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DVV14_RS12270 Genome accession   NZ_CP031472
Coordinates   2649506..2651029 (+) Length   507 a.a.
NCBI ID   WP_064488910.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2644506..2656029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS12255 (DVV14_12315) - 2646823..2647056 (-) 234 Protein_2334 branched chain amino acid aminotransferase -
  DVV14_RS12260 (DVV14_12320) ilvM 2647069..2647353 (-) 285 WP_006957495.1 acetolactate synthase 2 small subunit -
  DVV14_RS12265 (DVV14_12325) ilvG 2647355..2649001 (-) 1647 WP_021456907.1 acetolactate synthase 2 catalytic subunit -
  DVV14_RS12270 (DVV14_12330) comM 2649506..2651029 (+) 1524 WP_064488910.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DVV14_RS12275 (DVV14_12335) - 2651062..2652048 (-) 987 WP_064488909.1 DUF2860 domain-containing protein -
  DVV14_RS12280 (DVV14_12340) - 2652232..2653116 (+) 885 WP_006957501.1 acyltransferase -
  DVV14_RS12285 (DVV14_12345) - 2653172..2653792 (-) 621 WP_006957502.1 thiol:disulfide interchange protein DsbA/DsbL -
  DVV14_RS12290 (DVV14_12350) - 2653823..2654809 (-) 987 WP_064488908.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55156.29 Da        Isoelectric Point: 7.8196

>NTDB_id=307062 DVV14_RS12270 WP_064488910.1 2649506..2651029(+) (comM) [Vibrio coralliilyticus strain RE22]
MGLAIIYSRASVGVEAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPVSGLAEKEFVGELALSGELRGVKGVLPAALAANKAQRSLVIPHYNGDQAALVGEEQHKSAQSL
LEVCADLCGQQKLSLHQTKNLHRAVDNGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQQEINALNWKRRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQTILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTEVVKQRVLNARVCMLERSNKVNALLGSREIEEYCPLKKEDAQFLESALHRLGLSIRAYHRIIKVARTIADLDGQSQ
IARHHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=307062 DVV14_RS12270 WP_064488910.1 2649506..2651029(+) (comM) [Vibrio coralliilyticus strain RE22]
ATGGGCTTAGCCATTATTTACAGTCGGGCATCGGTGGGGGTTGAAGCGCCACCTGTGACGGTAGAGGTGCATATCAGTAA
TGGAATGCCGGGGTTCACTCTGGTGGGATTACCGGAAACCACCGTTAAAGAGTCACGCGACCGAGTGCGCAGTGCGATCA
TCAACTCTCGATTTGAGTTCCCAGCCAAGCGAATCACGGTCAATCTTGCACCCGCCGATCTGCCCAAGGAGGGAGGGCGC
TTTGATCTGCCGATTGCACTAGGCATTCTCGCCGCTTCAGAGCAGATCCCAGTCAGCGGCTTGGCAGAAAAAGAGTTCGT
TGGTGAACTGGCTTTGTCGGGGGAACTGCGAGGAGTGAAAGGAGTATTGCCTGCAGCGCTGGCAGCCAACAAAGCACAGC
GAAGCTTGGTTATACCTCATTACAACGGAGATCAAGCCGCGTTAGTGGGTGAAGAACAGCATAAATCTGCCCAAAGCTTA
TTAGAAGTGTGCGCCGATCTTTGCGGCCAACAAAAGCTTAGCCTGCATCAAACAAAAAATCTGCACCGAGCGGTGGATAA
TGGCCGCGACTTACAAGACATTATTGGTCAGCAGCAAGGTAAACGTGCTTTGGAAATTGCCGCGGCAGGTAACCACAACT
TGTTATTTTTAGGCCCGCCTGGGACGGGGAAAACCATGCTTGCCTCGCGTTTGTGCGATTTGCTGCCGGAAATGAGTGAC
GACGAAGCAATGGAAACGGCGTCTGTTGCGTCACTAACTCAGCAGGAGATCAATGCGCTTAACTGGAAGCGGCGCCCCTT
TCGTGCACCGCACCATTCAAGCTCAATGGCAGCGCTCGTCGGCGGAGGCACAATCCCAAGGCCGGGTGAAATTTCTTTGG
CGCACAATGGGTTGCTGTTTCTTGATGAAATGCCAGAGTTTGAACGTAAGGTGCTTGACTCATTGCGTGAGCCACTGGAA
TCCGGGGAGATTATTATCTCGCGTGCTCAGGGCAAAACTCGTTTCCCTGCACGCTTTCAGCTGGTGGGCGCCCTTAACCC
GAGTCCGACGGGGTATTACGAAGGTAATCAGTCGAGAGTTAATCCACAAACCATTTTACGTTATCTGAGTCGGTTATCTG
GCCCTCTACTGGATCGTTTTGATATGTCACTTGAGATCCCAGCGTTACCTAAAGGCACTTTGGCCGAAGGGGGCGATCGT
GGTGAACCTACAGAAGTAGTTAAGCAAAGGGTCCTCAATGCCAGAGTCTGTATGCTGGAGCGCTCCAATAAGGTTAATGC
ACTGTTGGGCAGTCGCGAAATAGAGGAGTACTGTCCATTGAAAAAAGAAGATGCGCAGTTTTTGGAGAGTGCGCTGCACC
GACTTGGGTTGTCAATTCGGGCTTATCACCGAATCATCAAGGTCGCGCGCACCATTGCTGATTTAGATGGTCAGTCGCAG
ATTGCTCGCCATCATCTGGCTGAAGCGTTGGGATATCGGGCAATGGACCGATTGCTTAAGCAATTGACCGCTCAGGCGGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

86.982

100

0.87
  comM Vibrio campbellii strain DS40M4

86.391

100

0.864
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

50.602

98.225

0.497
  comM Legionella pneumophila strain ERS1305867

50.602

98.225

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment