Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DVV14_RS10285 | Genome accession | NZ_CP031472 |
| Coordinates | 2247764..2248312 (-) | Length | 182 a.a. |
| NCBI ID | WP_006958299.1 | Uniprot ID | A0A097QHM9 |
| Organism | Vibrio coralliilyticus strain RE22 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2242764..2253312
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVV14_RS10265 (DVV14_10325) | - | 2243199..2243522 (-) | 324 | WP_064488114.1 | hypothetical protein | - |
| DVV14_RS10270 (DVV14_10330) | gspM | 2243515..2244165 (-) | 651 | WP_038509426.1 | type II secretion system protein GspM | - |
| DVV14_RS10275 (DVV14_10335) | - | 2244165..2245604 (-) | 1440 | WP_064488115.1 | MSHA biogenesis protein MshI | - |
| DVV14_RS10280 (DVV14_10340) | csrD | 2245601..2247616 (-) | 2016 | WP_006958298.1 | RNase E specificity factor CsrD | - |
| DVV14_RS10285 (DVV14_10345) | ssb | 2247764..2248312 (-) | 549 | WP_006958299.1 | single-stranded DNA-binding protein | Machinery gene |
| DVV14_RS10290 (DVV14_10350) | qstR | 2248594..2249241 (+) | 648 | WP_006958300.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| DVV14_RS10295 (DVV14_10355) | galU | 2249359..2250231 (+) | 873 | WP_006958301.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| DVV14_RS10300 (DVV14_10360) | uvrA | 2250371..2253193 (+) | 2823 | WP_064488116.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20140.20 Da Isoelectric Point: 4.9269
>NTDB_id=307056 DVV14_RS10285 WP_006958299.1 2247764..2248312(-) (ssb) [Vibrio coralliilyticus strain RE22]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=307056 DVV14_RS10285 WP_006958299.1 2247764..2248312(-) (ssb) [Vibrio coralliilyticus strain RE22]
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCTCTGTTTGGCAAGCTAGCTGAAGTTGCTGGTGAGTACTTACGCAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
CAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGTCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAGCAACCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCTCTGTTTGGCAAGCTAGCTGAAGTTGCTGGTGAGTACTTACGCAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
CAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGTCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAGCAACCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.978 |
100 |
0.819 |
| ssb | Glaesserella parasuis strain SC1401 |
55.44 |
100 |
0.588 |
| ssb | Neisseria meningitidis MC58 |
44.865 |
100 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
45.604 |
100 |
0.456 |