Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DW350_RS19145 Genome accession   NZ_CP031416
Coordinates   4021601..4023121 (-) Length   506 a.a.
NCBI ID   WP_115720474.1    Uniprot ID   -
Organism   Gallaecimonas mangrovi strain HK-28     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4016601..4028121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW350_RS19125 speE 4018300..4019160 (+) 861 WP_115720471.1 polyamine aminopropyltransferase -
  DW350_RS19130 - 4019257..4019892 (+) 636 WP_115720700.1 nicotinamidase -
  DW350_RS19135 pncB 4019894..4021126 (+) 1233 WP_115720472.1 nicotinate phosphoribosyltransferase -
  DW350_RS19140 - 4021154..4021477 (-) 324 WP_115720473.1 hypothetical protein -
  DW350_RS19145 comM 4021601..4023121 (-) 1521 WP_115720474.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DW350_RS19150 - 4023191..4024087 (-) 897 WP_115720475.1 2Fe-2S iron-sulfur cluster-binding protein -
  DW350_RS19155 - 4024084..4024761 (-) 678 WP_115720476.1 PepSY domain-containing protein -
  DW350_RS19160 ubiK 4024802..4025059 (-) 258 WP_115720477.1 ubiquinone biosynthesis accessory factor UbiK -
  DW350_RS19165 - 4025139..4025729 (-) 591 WP_192954755.1 TetR/AcrR family transcriptional regulator -
  DW350_RS19170 rep 4025834..4027849 (+) 2016 WP_115720479.1 DNA helicase Rep -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54364.65 Da        Isoelectric Point: 8.1405

>NTDB_id=306620 DW350_RS19145 WP_115720474.1 4021601..4023121(-) (comM) [Gallaecimonas mangrovi strain HK-28]
MALATLYCRAQLGMDAPLVTVEVDIGNGLPAFALVGLPEASVREARERVRSAIINAGFEFPARRITVNLAPAELPKEGGR
FDLAIAVGILQASNQVPMADNNKLEFYGELALSGELRPGSGLLPALLACQQAKRSAIFPEASLNEAQLLSRLSAYGAPSL
LAVCAHLAGQQPLPLLRFESPAAITPVDSLSINDVVGQAQAKRALMVAAAGGHHLLFIGPPGTGKSMLARRLPVLLPPLS
EDAAQQSAAIHSLAGKPRETDNWLSPPWRTPHHTASAVALVGGGSIPRPGEISLAHNGVLFLDELAEYDRKVLDCLREPM
ETGEVSISRAAHQAKFPARFRLIAAANPCPCGHFGNPRRACRCSPEQIRRYLARLSGPFLDRIDLQVEVAMLPPGSLSGQ
QQTGPDNDALRALVAACQARQYQRQGCLNSDLQGEAMRLACQLPPQLAQWYDATLQALGLSARVHHKLLKVARTLADWQK
QDAINQQHLSEAMQYRAMDRLLGALP

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=306620 DW350_RS19145 WP_115720474.1 4021601..4023121(-) (comM) [Gallaecimonas mangrovi strain HK-28]
ATGGCGTTAGCAACCTTGTACTGCCGTGCCCAACTGGGGATGGACGCCCCATTGGTCACGGTGGAAGTGGATATTGGCAA
TGGCTTGCCAGCTTTTGCCCTGGTGGGGTTGCCCGAGGCTTCGGTCCGAGAAGCCCGTGAAAGGGTGCGCTCTGCGATCA
TCAATGCCGGTTTTGAGTTTCCTGCCCGCCGTATCACCGTGAATTTAGCGCCTGCCGAGCTGCCCAAGGAAGGGGGACGT
TTTGACTTGGCCATTGCCGTTGGCATCTTACAGGCCTCGAACCAGGTGCCGATGGCCGACAACAATAAGCTGGAGTTTTA
TGGCGAGCTGGCGCTGTCTGGTGAGCTGCGCCCAGGCTCTGGGCTTTTGCCGGCGTTGCTGGCCTGCCAGCAAGCCAAGC
GCAGCGCTATCTTCCCAGAGGCAAGCCTTAATGAGGCGCAGCTACTTTCTCGTCTTAGTGCTTACGGCGCGCCTTCGCTG
CTGGCGGTATGTGCTCACCTGGCCGGGCAGCAGCCTTTGCCGTTATTACGCTTTGAATCACCAGCTGCGATAACGCCAGT
AGATAGCCTGTCTATTAACGATGTGGTCGGCCAGGCTCAGGCCAAAAGAGCGCTGATGGTCGCCGCCGCCGGAGGCCACC
ACTTGTTATTTATCGGCCCACCCGGCACCGGCAAAAGCATGCTGGCAAGAAGGTTGCCGGTGTTATTGCCACCGCTAAGT
GAAGATGCCGCCCAACAAAGCGCCGCCATTCATTCGTTGGCGGGTAAACCGCGCGAAACCGACAACTGGCTCAGTCCTCC
TTGGCGCACGCCTCATCACACCGCCTCGGCGGTGGCCTTGGTCGGCGGTGGCTCTATTCCAAGGCCGGGGGAAATTTCCC
TGGCCCATAACGGCGTGCTGTTTTTAGACGAATTGGCCGAGTATGACCGTAAGGTGCTGGACTGCCTGCGCGAGCCCATG
GAAACCGGCGAAGTGAGCATCAGCCGCGCTGCCCATCAGGCCAAGTTCCCGGCTCGGTTTCGGTTAATTGCCGCCGCCAA
CCCCTGCCCCTGTGGGCATTTTGGTAATCCACGGCGGGCTTGCCGCTGTAGCCCTGAGCAAATACGCCGCTATTTGGCGC
GGCTGTCCGGGCCTTTTCTGGACCGTATCGATTTACAAGTGGAAGTGGCAATGTTGCCGCCGGGCAGCTTAAGCGGGCAG
CAGCAAACCGGGCCGGATAATGACGCTTTACGGGCCCTGGTGGCCGCTTGCCAAGCGCGGCAATATCAGCGTCAAGGCTG
CCTTAATAGCGACCTGCAAGGAGAAGCCATGCGCCTTGCCTGCCAACTGCCACCACAGCTTGCCCAGTGGTACGACGCTA
CCTTACAAGCCCTGGGGCTATCGGCGCGGGTACACCATAAGTTGCTGAAGGTAGCGCGTACCCTCGCCGACTGGCAAAAG
CAAGACGCCATTAACCAACAGCACTTGAGTGAAGCCATGCAATACCGGGCGATGGACCGGCTGCTCGGTGCGTTACCCTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.969

100

0.522
  comM Vibrio cholerae strain A1552

52.079

99.802

0.52
  comM Glaesserella parasuis strain SC1401

51.575

100

0.518
  comM Vibrio campbellii strain DS40M4

50.099

100

0.502
  comM Legionella pneumophila str. Paris

47.129

99.802

0.47
  comM Legionella pneumophila strain ERS1305867

47.129

99.802

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.588

100

0.409

Multiple sequence alignment