Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DW349_RS01140 Genome accession   NZ_CP031415
Coordinates   232006..233505 (-) Length   499 a.a.
NCBI ID   WP_108125845.1    Uniprot ID   -
Organism   Saccharospirillum mangrovi strain HK-33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 227006..238505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW349_RS01110 - 227194..227772 (+) 579 WP_108125839.1 acyloxyacyl hydrolase -
  DW349_RS01115 - 227773..228459 (-) 687 WP_108125840.1 TVP38/TMEM64 family protein -
  DW349_RS01120 pyrE 228544..229230 (-) 687 WP_108125841.1 orotate phosphoribosyltransferase -
  DW349_RS01125 - 229488..230249 (+) 762 WP_108125842.1 exodeoxyribonuclease III -
  DW349_RS01130 - 230370..230933 (-) 564 WP_108125843.1 TetR/AcrR family transcriptional regulator -
  DW349_RS01135 - 231060..231980 (+) 921 WP_108125844.1 alpha/beta hydrolase -
  DW349_RS01140 comM 232006..233505 (-) 1500 WP_108125845.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DW349_RS01145 ilvB 233857..235524 (+) 1668 WP_108125846.1 biosynthetic-type acetolactate synthase large subunit -
  DW349_RS01150 - 235539..236519 (-) 981 WP_108125847.1 NAD(P)H-binding protein -
  DW349_RS01155 - 236681..237658 (-) 978 WP_108125848.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53399.22 Da        Isoelectric Point: 7.6026

>NTDB_id=306580 DW349_RS01140 WP_108125845.1 232006..233505(-) (comM) [Saccharospirillum mangrovi strain HK-33]
MSLAVLYSRARLGMDAPLVTIEVHLTNGLPAFTMVGLPEAAVKEARDRVRSAILNSQFDFPDRRITVNMAPADLPKQGAQ
FDLAIALGILIASGQLPGDGIDGYEFYGELALSGELRSGLASLPAAIACTDAKRVLITSPAGAADAALASGSDVRHASHL
LQVTSHFRGHKTLPQAEHSPLGPIPLVPDLIDVKGQEGAKRALEIAAAGRHNLLFFGPPGTGKTLLASRLPGLLPPLTET
EALEVASVQSVCGLPLNWGQRPFRAPHHTASGVALIGGGSIPRPGEVTLAHRGVLFLDELAEFPRAALDVLREPLESGEV
NIARAARQTTFPARFQLVAAMNPTPGGYSPDDPRSQRYTREQMQRYLSRLSGPLLDRIDLHIEVPALPKSVLSQAKPGES
TATVQARVALAWQRQLDRQGCANADLAGATLEQHCRLQPAEQSLLETAMERLRLSARAYHRILRVARTVADLNGQHEIDK
SALIEALNGRQLEKLLGAV

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=306580 DW349_RS01140 WP_108125845.1 232006..233505(-) (comM) [Saccharospirillum mangrovi strain HK-33]
ATGAGTTTAGCGGTGCTTTATAGCCGCGCGCGTTTAGGGATGGACGCGCCGCTGGTCACCATCGAAGTGCATCTCACCAA
TGGCCTGCCGGCCTTCACCATGGTCGGTTTGCCGGAAGCCGCGGTTAAGGAAGCGCGTGACCGGGTGCGTTCGGCCATCC
TCAACAGCCAGTTCGATTTCCCCGACCGTCGCATCACCGTGAACATGGCGCCTGCCGACTTGCCAAAACAAGGCGCGCAA
TTCGATCTGGCGATTGCGCTCGGTATTTTGATCGCCAGCGGGCAATTGCCTGGCGACGGCATCGACGGTTACGAGTTCTA
TGGCGAACTGGCGTTGTCTGGCGAGTTGCGCTCCGGCCTTGCGTCACTGCCCGCAGCCATTGCCTGTACCGACGCCAAAC
GCGTGCTGATTACCAGCCCCGCAGGCGCGGCCGATGCCGCTTTGGCCAGCGGTTCCGACGTGCGCCACGCCAGCCATTTG
CTGCAAGTGACCAGTCACTTTCGCGGCCACAAAACCCTGCCACAGGCCGAACATTCGCCACTTGGGCCGATACCGTTGGT
GCCCGACCTGATCGACGTTAAAGGCCAGGAAGGCGCCAAACGCGCGTTGGAAATCGCTGCGGCCGGGCGTCATAACCTGC
TGTTTTTTGGTCCGCCAGGAACCGGCAAAACTCTGTTGGCATCGCGACTGCCCGGCTTGTTGCCACCGCTGACAGAAACC
GAAGCGCTGGAAGTCGCCAGCGTGCAATCGGTTTGTGGTTTGCCGCTGAATTGGGGTCAACGGCCGTTTCGCGCGCCGCA
CCATACTGCCTCGGGCGTGGCGTTGATCGGCGGTGGTTCGATTCCGCGACCGGGCGAAGTCACGCTGGCACATCGCGGCG
TTTTATTCCTGGACGAGTTGGCGGAATTTCCACGCGCGGCGCTCGATGTGTTGCGCGAGCCGCTGGAAAGCGGCGAAGTC
AACATCGCCCGGGCCGCACGCCAGACGACTTTTCCGGCGCGCTTTCAACTGGTCGCGGCAATGAACCCAACCCCCGGTGG
TTACAGCCCGGACGATCCACGCTCGCAACGCTACACGCGCGAGCAAATGCAGCGCTATTTGTCGCGGTTATCTGGCCCGT
TATTGGATCGCATCGACTTACACATTGAAGTGCCGGCGCTGCCTAAATCGGTGTTGAGTCAGGCCAAGCCGGGAGAAAGT
ACAGCAACCGTTCAGGCGCGGGTCGCACTCGCCTGGCAACGTCAGCTGGATCGCCAGGGCTGTGCCAACGCCGACCTCGC
CGGCGCAACGCTGGAACAACATTGCCGTCTGCAACCGGCTGAACAATCGTTGCTGGAAACGGCGATGGAACGCCTGCGGC
TCAGCGCTCGGGCTTATCATCGGATTTTGCGGGTGGCGCGCACGGTGGCCGATTTAAACGGCCAACACGAGATTGATAAA
AGCGCGTTAATCGAAGCGTTGAATGGCAGGCAGTTGGAGAAGTTGTTGGGCGCGGTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(398-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.691

100

0.549
  comM Haemophilus influenzae Rd KW20

53.663

100

0.543
  comM Vibrio campbellii strain DS40M4

53.162

100

0.539
  comM Glaesserella parasuis strain SC1401

53.069

100

0.537
  comM Legionella pneumophila str. Paris

48.323

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.323

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.681

100

0.463

Multiple sequence alignment