Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DWG18_RS12590 Genome accession   NZ_CP031413
Coordinates   2584228..2585754 (+) Length   508 a.a.
NCBI ID   WP_115647506.1    Uniprot ID   A0A345ZMQ4
Organism   Lysobacter sp. TY2-98     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2579228..2590754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWG18_RS12565 (DWG18_12565) speE 2580442..2581290 (+) 849 WP_115648178.1 polyamine aminopropyltransferase -
  DWG18_RS12570 (DWG18_12570) - 2581344..2583218 (+) 1875 WP_115647504.1 tetratricopeptide repeat-containing diguanylate cyclase -
  DWG18_RS12575 (DWG18_12575) - 2583229..2583567 (-) 339 WP_036141567.1 P-II family nitrogen regulator -
  DWG18_RS15435 (DWG18_12580) - 2583664..2583813 (+) 150 WP_115647505.1 hypothetical protein -
  DWG18_RS12585 (DWG18_12585) - 2583936..2584217 (+) 282 WP_115648179.1 accessory factor UbiK family protein -
  DWG18_RS12590 (DWG18_12590) comM 2584228..2585754 (+) 1527 WP_115647506.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DWG18_RS12595 (DWG18_12595) - 2585755..2586207 (-) 453 WP_115647507.1 hypothetical protein -
  DWG18_RS12600 (DWG18_12600) aceA 2586309..2587598 (-) 1290 WP_115647508.1 isocitrate lyase -
  DWG18_RS12605 (DWG18_12605) aceB 2587694..2589301 (-) 1608 WP_115647509.1 malate synthase A -
  DWG18_RS12610 (DWG18_12610) - 2589415..2590368 (+) 954 WP_115647510.1 LysR family transcriptional regulator -
  DWG18_RS12615 (DWG18_12615) - 2590383..2590637 (-) 255 WP_162823836.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53452.31 Da        Isoelectric Point: 8.0234

>NTDB_id=306571 DWG18_RS12590 WP_115647506.1 2584228..2585754(+) (comM) [Lysobacter sp. TY2-98]
MNLAIVHSRARTGIRAPEVRVEVHLGGGLPAMNIVGLPEAAVREAKDRVRAAIACAQFEFPQRRITVNLAPADLPKDGGR
FDLPIALGILAASGQIPLDALRDVEFLGELALTGELRAIDGVLPAALAAGDAGHRLVVPGANGAEAALASRVEVRTARTL
LQVCAMLAGRDALPTAVATPVERVRGPDLTDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEAE
ALESAAIASISGRGLDPSRWLERPFRAPHHTASAVALIGGGAQPRPGEVSLAHNGVLFLDEFPEWERRALEVLREPLESG
VVTVSRAARSSEFPARFQLVAAMNPCPCGWAGDPSGRCRCSGDAVQRYRAKVSGPLLDRIDLHVGLTRLPASELSAAAPS
GESSAEVRARVECARAVQLARCGQPNARMTPGETLNLCRLESRDQALLERAVERLQLSARSMVRILRVARTIADLAGEAD
IGTSHLAEAIGYRTLDRQRDSAALAGAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=306571 DWG18_RS12590 WP_115647506.1 2584228..2585754(+) (comM) [Lysobacter sp. TY2-98]
ATGAATCTTGCGATCGTGCACAGCCGTGCGCGAACGGGCATCCGTGCGCCAGAAGTGCGCGTCGAAGTGCATCTGGGCGG
CGGCCTGCCGGCGATGAACATCGTTGGTCTGCCCGAGGCTGCGGTGCGCGAAGCGAAGGACCGCGTGCGCGCGGCGATCG
CTTGCGCGCAGTTCGAATTTCCACAGCGGCGCATCACGGTGAACCTCGCGCCTGCGGACCTGCCGAAGGATGGTGGGCGC
TTCGACCTGCCAATCGCGCTCGGTATCCTCGCCGCGAGCGGACAGATTCCGCTCGATGCGTTGCGCGACGTCGAATTCCT
CGGCGAGCTTGCGCTGACCGGCGAACTGCGCGCCATCGACGGCGTGCTGCCCGCCGCGCTCGCGGCCGGCGATGCGGGAC
ATCGTCTCGTGGTCCCCGGGGCGAACGGCGCCGAAGCCGCACTTGCCTCGCGCGTGGAAGTGCGCACCGCGCGCACGCTG
CTGCAGGTGTGCGCGATGCTCGCCGGTCGCGACGCGTTGCCGACCGCGGTCGCGACACCGGTCGAACGCGTGCGCGGGCC
GGATCTCACCGATGTGCGCGGGCAGGCGCAGGCGCGACGCGCACTGGAGATCGCCGCCGCGGGCGGGCATCACCTGCTGC
TGATCGGCCCGCCGGGATGCGGCAAGACGCTGCTGGCGTCGCGGCTGCCCGGGCTGTTACCGGAAGCCAGCGAAGCCGAA
GCACTGGAATCCGCGGCGATCGCGTCGATCAGTGGACGCGGCCTCGATCCGTCGCGCTGGCTCGAGCGTCCGTTCCGAGC
GCCGCACCACACCGCGAGCGCGGTCGCACTCATCGGCGGCGGGGCGCAACCACGGCCGGGCGAAGTCTCGCTCGCCCACA
ACGGCGTGCTGTTTCTCGACGAATTTCCGGAATGGGAGCGCCGCGCACTGGAAGTGCTGCGCGAACCGCTGGAGTCCGGC
GTCGTCACCGTATCGCGCGCCGCGCGCAGCTCCGAATTTCCGGCGCGCTTCCAGCTGGTCGCGGCCATGAATCCCTGCCC
CTGCGGTTGGGCCGGCGATCCGTCGGGACGCTGTCGCTGCAGTGGCGATGCGGTGCAGCGCTATCGCGCGAAGGTCTCCG
GCCCCTTGCTCGATCGCATCGACCTGCACGTCGGCCTGACGCGTCTGCCCGCCAGCGAATTGAGTGCGGCCGCGCCAAGC
GGTGAATCGAGCGCCGAGGTGCGCGCCCGCGTCGAATGCGCGCGTGCGGTGCAGCTCGCGCGCTGCGGCCAGCCCAACGC
GCGCATGACACCCGGCGAGACGCTCAACCTCTGCCGACTGGAATCACGCGATCAGGCCTTGCTCGAGCGCGCCGTCGAAC
GCCTGCAGCTGTCCGCGCGCTCCATGGTGCGCATCCTGCGTGTGGCGCGCACGATCGCCGACCTCGCCGGCGAGGCCGAC
ATCGGTACGTCGCATCTCGCCGAGGCGATCGGCTATCGAACGCTCGACCGCCAGCGCGACAGTGCCGCGCTGGCCGGTGC
TGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345ZMQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.11

98.228

0.541
  comM Vibrio campbellii strain DS40M4

54.4

98.425

0.535
  comM Glaesserella parasuis strain SC1401

52.976

99.213

0.526
  comM Haemophilus influenzae Rd KW20

52.183

99.213

0.518
  comM Legionella pneumophila str. Paris

50.605

97.638

0.494
  comM Legionella pneumophila strain ERS1305867

50.605

97.638

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.562

99.803

0.455

Multiple sequence alignment