Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CCO2228_RS03080 Genome accession   NZ_CP035927
Coordinates   595412..595987 (-) Length   191 a.a.
NCBI ID   WP_002776257.1    Uniprot ID   A0ABN0EQ59
Organism   Campylobacter coli strain RM2228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 590412..600987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS03060 (CCO2228_0595) - 591316..592455 (+) 1140 WP_002776249.1 hydrogenase small subunit -
  CCO2228_RS03065 (CCO2228_0596) - 592461..594176 (+) 1716 WP_002776252.1 nickel-dependent hydrogenase large subunit -
  CCO2228_RS03070 (CCO2228_0597) cybH 594188..594880 (+) 693 WP_002776254.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  CCO2228_RS03075 (CCO2228_0598) - 594877..595410 (+) 534 WP_002780939.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  CCO2228_RS03080 (CCO2228_0599) recR 595412..595987 (-) 576 WP_002776257.1 recombination mediator RecR Machinery gene
  CCO2228_RS03085 (CCO2228_0600) - 595977..597227 (-) 1251 WP_002776258.1 ArsS family sensor histidine kinase -
  CCO2228_RS03090 (CCO2228_0601) - 597224..597895 (-) 672 WP_002776259.1 response regulator transcription factor -
  CCO2228_RS03095 (CCO2228_0602) dnaJ 598042..599166 (+) 1125 WP_002776260.1 molecular chaperone DnaJ -
  CCO2228_RS03100 (CCO2228_0603) - 599306..600556 (-) 1251 WP_002776261.1 major outer membrane protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21732.15 Da        Isoelectric Point: 6.1072

>NTDB_id=306515 CCO2228_RS03080 WP_002776257.1 595412..595987(-) (recR) [Campylobacter coli strain RM2228]
MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMKLAHNIENAIRFIKPCQQCGSLSENELCEICTDDERD
KNCLCIVQSPKDVLVIEESKSYGGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
SKIAQGIPSGVNLENVDFISLNKAINFRTKV

Nucleotide


Download         Length: 576 bp        

>NTDB_id=306515 CCO2228_RS03080 WP_002776257.1 595412..595987(-) (recR) [Campylobacter coli strain RM2228]
ATGACGCATAAGGGTATAGAAAAATTTAACGAACTTGTAGAAAGTTTTGCAAAATTACCCACTATCGGTAAAAAAACTGC
TATTCGCCTTGCTTATCATATTTGCACAGGAAATCAACTCGAAGGTATGAAGCTCGCACACAATATAGAAAATGCTATAC
GCTTTATAAAACCCTGTCAACAATGCGGGTCTTTAAGCGAAAACGAACTTTGTGAAATTTGCACCGATGATGAAAGGGAT
AAAAATTGCTTATGTATAGTGCAAAGCCCTAAAGATGTTTTGGTTATAGAAGAGAGTAAAAGTTATGGGGGCTTGTATTT
TGTTTTAGATGAATTAAACGATGAAAAGCTTGCTCAATTAAGACAAATGATACTAAAATTACAAAGCAAAGAACTCATTT
TTGCTTTCACTCATAATTTAAATTCCGATGCAATGATTTTTTATATAGAAGATAGGCTTAAAGATTTAAATTTACAATTT
AGCAAAATCGCACAAGGTATTCCAAGTGGAGTAAATTTAGAAAATGTTGACTTTATATCTCTAAACAAAGCCATCAATTT
TCGCACCAAAGTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

36.649

100

0.366

Multiple sequence alignment