Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   DLE02_RS18170 Genome accession   NZ_CP031383
Coordinates   3782192..3782932 (-) Length   246 a.a.
NCBI ID   WP_236091514.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LUH 6011     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3777192..3787932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLE02_RS18150 (DLE02_03590) aroB 3777734..3778816 (-) 1083 WP_001193991.1 3-dehydroquinate synthase -
  DLE02_RS18155 (DLE02_03591) aroK 3778845..3779414 (-) 570 WP_000643712.1 shikimate kinase AroK -
  DLE02_RS18160 (DLE02_03592) pilQ 3779426..3781591 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  DLE02_RS18165 (DLE02_03593) pilP 3781654..3782181 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  DLE02_RS18170 (DLE02_03594) pilO 3782192..3782932 (-) 741 WP_236091514.1 type 4a pilus biogenesis protein PilO Machinery gene
  DLE02_RS18175 (DLE02_03595) pilN 3782929..3783570 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  DLE02_RS18180 (DLE02_03596) pilM 3783570..3784628 (-) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  DLE02_RS18185 (DLE02_03597) ponA 3784790..3787345 (+) 2556 WP_000736667.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27817.55 Da        Isoelectric Point: 4.8357

>NTDB_id=306513 DLE02_RS18170 WP_236091514.1 3782192..3782932(-) (pilO) [Acinetobacter baumannii strain LUH 6011]
MSQDELQELSLEQLSAKKKKYNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=306513 DLE02_RS18170 WP_236091514.1 3782192..3782932(-) (pilO) [Acinetobacter baumannii strain LUH 6011]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATATAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment