Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DMO12_RS17140 Genome accession   NZ_CP031380
Coordinates   3596800..3597618 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii ACICU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591800..3602618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMO12_RS17125 (DMO12_10206) pilE 3592017..3592442 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  DMO12_RS17130 (DMO12_10209) pilY2 3592439..3592921 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  DMO12_RS17135 (DMO12_10212) pilY1 3592934..3596788 (-) 3855 WP_000768964.1 PilC/PilY family type IV pilus protein Machinery gene
  DMO12_RS17140 (DMO12_10215) pilX 3596800..3597618 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DMO12_RS17145 (DMO12_10218) pilW 3597615..3598616 (-) 1002 WP_000079192.1 PilW family protein Machinery gene
  DMO12_RS17150 (DMO12_10221) pilV 3598617..3599177 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  DMO12_RS17155 (DMO12_10224) fimU 3599171..3599644 (-) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DMO12_RS17160 (DMO12_10227) ispH 3599814..3600764 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DMO12_RS17165 (DMO12_10230) gmk 3600887..3601516 (+) 630 WP_000015937.1 guanylate kinase -
  DMO12_RS17170 (DMO12_10233) rpoZ 3601589..3601867 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DMO12_RS17175 - 3601906..3602036 (+) 131 Protein_3352 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=306458 DMO12_RS17140 WP_000149377.1 3596800..3597618(-) (pilX) [Acinetobacter baumannii ACICU]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=306458 DMO12_RS17140 WP_000149377.1 3596800..3597618(-) (pilX) [Acinetobacter baumannii ACICU]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment