Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   DMO12_RS17155 Genome accession   NZ_CP031380
Coordinates   3599171..3599644 (-) Length   157 a.a.
NCBI ID   WP_001214067.1    Uniprot ID   A0A7U3Y304
Organism   Acinetobacter baumannii ACICU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3594171..3604644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMO12_RS17140 (DMO12_10215) pilX 3596800..3597618 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DMO12_RS17145 (DMO12_10218) pilW 3597615..3598616 (-) 1002 WP_000079192.1 PilW family protein Machinery gene
  DMO12_RS17150 (DMO12_10221) pilV 3598617..3599177 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  DMO12_RS17155 (DMO12_10224) fimU 3599171..3599644 (-) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DMO12_RS17160 (DMO12_10227) ispH 3599814..3600764 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DMO12_RS17165 (DMO12_10230) gmk 3600887..3601516 (+) 630 WP_000015937.1 guanylate kinase -
  DMO12_RS17170 (DMO12_10233) rpoZ 3601589..3601867 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DMO12_RS17175 - 3601906..3602036 (+) 131 Protein_3352 hypothetical protein -
  DMO12_RS17180 (DMO12_10236) - 3602076..3604181 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.40 Da        Isoelectric Point: 8.5355

>NTDB_id=306461 DMO12_RS17155 WP_001214067.1 3599171..3599644(-) (fimU) [Acinetobacter baumannii ACICU]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=306461 DMO12_RS17155 WP_001214067.1 3599171..3599644(-) (fimU) [Acinetobacter baumannii ACICU]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGGTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y304

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment