Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EXA02_RS17680 Genome accession   NZ_CP035841
Coordinates   3626212..3626727 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain TW10722     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3621212..3631727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA02_RS17635 csrA 3621799..3621984 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EXA02_RS17665 yqaB 3623442..3624008 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EXA02_RS17670 yqaA 3624005..3624433 (+) 429 WP_001287457.1 YqaA family protein -
  EXA02_RS17675 gshA 3624506..3626062 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EXA02_RS17680 luxS 3626212..3626727 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  EXA02_RS17685 emrB 3626791..3628329 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EXA02_RS17690 emrA 3628346..3629518 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EXA02_RS17695 emrR 3629645..3630175 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EXA02_RS17700 ygaH 3630266..3630601 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EXA02_RS17705 ygaZ 3630591..3631328 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=305672 EXA02_RS17680 WP_001130210.1 3626212..3626727(+) (luxS) [Escherichia coli strain TW10722]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=305672 EXA02_RS17680 WP_001130210.1 3626212..3626727(+) (luxS) [Escherichia coli strain TW10722]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment