Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DV155_RS01575 Genome accession   NZ_CP031326
Coordinates   282342..283007 (-) Length   221 a.a.
NCBI ID   WP_101118812.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21374     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 277342..288007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV155_RS01535 - 277516..277941 (+) 426 Protein_260 AzlC family ABC transporter permease -
  DV155_RS01555 pilX 279692..280165 (-) 474 WP_205254963.1 PilX family type IV pilin Machinery gene
  DV155_RS01560 pilK 280170..280763 (-) 594 WP_115431786.1 pilus assembly protein Machinery gene
  DV155_RS01565 pilJ 280742..281689 (-) 948 WP_041423518.1 PilW family protein Machinery gene
  DV155_RS01570 pilV 281686..282309 (-) 624 WP_115431813.1 type IV pilus modification protein PilV Machinery gene
  DV155_RS01575 pilH 282342..283007 (-) 666 WP_101118812.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV155_RS01580 dnaB 283309..284715 (-) 1407 WP_002213843.1 replicative DNA helicase -
  DV155_RS01590 - 284878..285465 (+) 588 WP_002242525.1 superoxide dismutase -
  DV155_RS01600 - 286691..287200 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DV155_RS01605 - 287531..287863 (-) 333 WP_002213854.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24587.14 Da        Isoelectric Point: 9.8198

>NTDB_id=305676 DV155_RS01575 WP_101118812.1 282342..283007(-) (pilH) [Neisseria meningitidis strain M21374]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDSGKKGQGMLAFGDKNGNKIYDGDVTDVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTN
NQHLTKQSSFSYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=305676 DV155_RS01575 WP_101118812.1 282342..283007(-) (pilH) [Neisseria meningitidis strain M21374]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCATGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGATATATGACGGCGA
TGTGACGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAAACGCAGCCGACCGCCGACCGCGTTGTTTGGACGTTCAATCAAAACGGGACGTTTGGTTATACGAAT
AACCAGCATCTTACAAAACAATCCAGCTTTTCTTATTCCGACGGTTATATTCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.163

100

0.842

Multiple sequence alignment