Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   DV155_RS01565 Genome accession   NZ_CP031326
Coordinates   280742..281689 (-) Length   315 a.a.
NCBI ID   WP_041423518.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21374     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275742..286689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV155_RS01530 dut 276921..277373 (-) 453 WP_002220679.1 dUTP diphosphatase -
  DV155_RS01535 - 277516..277941 (+) 426 Protein_260 AzlC family ABC transporter permease -
  DV155_RS01555 pilX 279692..280165 (-) 474 WP_205254963.1 PilX family type IV pilin Machinery gene
  DV155_RS01560 pilK 280170..280763 (-) 594 WP_115431786.1 pilus assembly protein Machinery gene
  DV155_RS01565 pilJ 280742..281689 (-) 948 WP_041423518.1 PilW family protein Machinery gene
  DV155_RS01570 pilV 281686..282309 (-) 624 WP_115431813.1 type IV pilus modification protein PilV Machinery gene
  DV155_RS01575 pilH 282342..283007 (-) 666 WP_101118812.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV155_RS01580 dnaB 283309..284715 (-) 1407 WP_002213843.1 replicative DNA helicase -
  DV155_RS01590 - 284878..285465 (+) 588 WP_002242525.1 superoxide dismutase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34776.54 Da        Isoelectric Point: 8.9796

>NTDB_id=305674 DV155_RS01565 WP_041423518.1 280742..281689(-) (pilJ) [Neisseria meningitidis strain M21374]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVVSDVVQKNRLFSLNLKRNSTNKLIPITESSNINYPNFFQVDSALIFQYGIDDVNASTATTVVSSCAAI
SKPGKQIPTLEDAKKELKILDQDKEQNGNIARQRHVVNAYAVGRIADEEGLFRFQLDDKGKWGNPQLLVKKVRRMKVRYI
YVSGCPEDDDAGKEETFKYTDKFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 948 bp        

>NTDB_id=305674 DV155_RS01565 WP_041423518.1 280742..281689(-) (pilJ) [Neisseria meningitidis strain M21374]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCAGGGGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTGTTTCCGATGTGGTGCAAAAAAACCGTCTTTTTTCCTTAAACTT
AAAAAGGAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAAATATCAATTATCCGAATTTTTTCCAGGTTGATA
GCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCACCGCGACTACCGTCGTCAGCAGCTGTGCCGCAATA
TCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCTGGATCAGGATAAGGAGCAAAA
TGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGGAAGGTTTGTTCCGCT
TCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACGTATGAAAGTGCGGTATATC
TATGTTTCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCTCCAC
AAATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATC
ATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

85.22

100

0.86

Multiple sequence alignment