Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EXA02_RS18035 Genome accession   NZ_CP035841
Coordinates   3690892..3691629 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain TW10722     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3685892..3696629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA02_RS18005 yfiL 3686050..3686415 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  EXA02_RS18010 aroF 3686625..3687695 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EXA02_RS18015 tyrA 3687706..3688827 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EXA02_RS18020 pheA 3688870..3690030 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  EXA02_RS18025 pheL 3690129..3690176 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EXA02_RS18030 raiA 3690280..3690621 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EXA02_RS18035 comL 3690892..3691629 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EXA02_RS18040 rluD 3691764..3692744 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EXA02_RS18045 yfiH 3692741..3693472 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  EXA02_RS18050 clpC 3693602..3696175 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=305673 EXA02_RS18035 WP_000197686.1 3690892..3691629(-) (comL) [Escherichia coli strain TW10722]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=305673 EXA02_RS18035 WP_000197686.1 3690892..3691629(-) (comL) [Escherichia coli strain TW10722]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment