Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DV115_RS07905 Genome accession   NZ_CP031325
Coordinates   1415385..1417574 (-) Length   729 a.a.
NCBI ID   WP_115437596.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410385..1422574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS07885 nrdR 1411061..1411525 (-) 465 WP_003752937.1 transcriptional regulator NrdR -
  DV115_RS07890 - 1411554..1412396 (-) 843 WP_003752939.1 class II glutamine amidotransferase -
  DV115_RS07895 aroB 1412879..1413958 (-) 1080 WP_115437595.1 3-dehydroquinate synthase -
  DV115_RS07900 - 1413969..1414481 (-) 513 WP_003752945.1 shikimate kinase -
  DV115_RS07905 pilQ 1415385..1417574 (-) 2190 WP_115437596.1 type IV pilus secretin PilQ Machinery gene
  DV115_RS07910 pilP 1417592..1418137 (-) 546 WP_003750267.1 pilus assembly protein PilP Machinery gene
  DV115_RS07915 - 1418155..1418817 (-) 663 WP_003750266.1 type 4a pilus biogenesis protein PilO -
  DV115_RS07920 pilN 1418818..1419417 (-) 600 WP_003750265.1 PilN domain-containing protein Machinery gene
  DV115_RS07925 pilM 1419420..1420535 (-) 1116 WP_115437597.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 78735.69 Da        Isoelectric Point: 9.8535

>NTDB_id=305651 DV115_RS07905 WP_115437596.1 1415385..1417574(-) (pilQ) [Neisseria polysaccharea strain M18661]
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEVVNPTGFITSSPARIALDFEQTGISMNQQVL
EYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNEVWILINESDDTVSAPARPAVKAAPAAQAAAPAKQQAAVPFT
ESVVSVSAPFSPATQQTAAVQAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQRDHIIVTLKNHTLPTALQRSLDVAD
FKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGHFTFQVLPKKQNLESGGVNNAPKTFKGRKISLDFQDVEVRTIL
QILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGAL
YSQNFQLKYKNVEEFRSILRLDNADTTGNRNTLISGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEAR
IVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEGGDGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSA
SESLSKTKTLANPRVLTQNRKEAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPV
DCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFITPRIM
DTAGNSLRY

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=305651 DV115_RS07905 WP_115437596.1 1415385..1417574(-) (pilQ) [Neisseria polysaccharea strain M18661]
ATGAATACCAAACTGACAAAAATCATTTCCGGCCTGTTTGTCGCAACCGCCGCCTTTCAGACGGCATCGGCAGGAAACAT
TACAGACATCAAAGTTTCCTCCCTGCCTAACAAACAGAAAATCGTCAAAGTCAGCTTTGACAAAGAGGTTGTCAACCCGA
CTGGCTTCATCACTTCGTCGCCCGCGCGCATCGCCTTGGACTTTGAACAAACCGGCATTTCCATGAATCAACAGGTACTC
GAGTATGCCGACCCTCTGTTGAGCAAAATCAGTGCCGCACAGAACAGCAGCCGTGCGCGTCTGGTTCTGAATCTGAACAA
ACCGGGTCAATACAATACCGAAGTACGCGGAAATGAAGTTTGGATTCTCATCAACGAATCGGACGATACCGTGTCCGCCC
CCGCCCGCCCCGCCGTAAAAGCCGCGCCTGCCGCACAGGCTGCCGCACCAGCAAAACAACAAGCCGCCGTACCGTTTACC
GAGTCCGTAGTATCCGTATCCGCTCCGTTCAGCCCCGCAACACAACAAACGGCGGCTGTACAGGCAAAACAAACCAATAT
CGATTTCCGCAAAGACGGTAAAAATGCCGGCATTATCGAATTGGCGGCATTGGGCTTTGCCGGGCAGCCCGACATCAGCC
AACAGCGCGACCACATCATCGTTACGCTGAAAAACCATACCCTGCCGACCGCGCTCCAACGCAGTTTGGATGTGGCAGAC
TTCAAAACACCGGTTCAAAAGGTTACGCTGAAACGCCTCAATAACGACACCCAGCTGATTATCACAACAGCCGGCAACTG
GGAACTCGTCAACAAATCCGCCGCGCCCGGACACTTTACCTTCCAAGTCCTGCCGAAAAAACAAAATCTCGAGTCAGGCG
GCGTGAACAATGCGCCCAAAACCTTCAAAGGCCGGAAAATCTCCCTTGACTTCCAAGATGTCGAAGTCCGCACCATCCTG
CAGATTTTGGCCAAAGAATCCGGAATGAATATTGTTGCCAGCGACTCCGTCAACGGCAAAATGACCCTCTCCCTCAAAGA
TGTGCCTTGGGATCAGGCTTTGGATTTGGTTATGCAGGCGCGCAACCTCGATATGCGCCAGCAAGGGAACATCGTCAACA
TCGCGCCCCGCGACGAGCTGCTTGCCAAAGACAAAGCCTTCTTACAGGCAGAAAAAGACATCGCCGATCTGGGCGCGCTG
TATTCCCAAAACTTCCAGTTGAAATACAAAAATGTGGAAGAATTCCGCAGCATCCTGCGTTTGGACAATGCCGACACGAC
CGGAAACCGCAACACGCTTATCAGCGGCAGGGGCAGCGTGCTGATCGATCCCGCCACCAACACCCTGATTGTTACCGATA
CCCGCAGCGTCATCGAAAAATTCCGCAAACTGATTGACGAATTGGACGTGCCCGCGCAACAAGTAATGATTGAGGCGCGC
ATCGTCGAGGCGGCAGACGGCTTCTCGCGCGATTTGGGCGTTAAGTTCGGTGCGACAGGCAAGAAAAAACTGAAAGATGC
AGACCGCGCATTCGGCTGGGGTGTGAACTCGGGTTTTGAAGGCGGCGACGGCAAATGGTCTGCCCAAACCAGCATCAACC
TGCCGGTTGCCGCTGCCGCAAACAGCATTTCGCTGGTGCGCGCGATTTCCTCCGGCGCGTTGAATTTGGAATTGTCCGCA
TCCGAGTCGCTTTCAAAAACCAAAACGCTTGCCAATCCGCGCGTGCTGACCCAAAACCGCAAAGAGGCCAAAATCGAATC
CGGTACAGAAATCCCCTACCAAGACACTTCAAGTTCGGGCAGCAGCAGCAGCACAACCACAACCTTCAAAAAAGCCGTCT
TGGGGCTGACCGTTACGCCGAACATCACGCCCGACGGGCAAATCATTATGACCGTCAAAATCAATAAAGACACGCCTGTC
GACTGTACCGTAAAAGATGAGACGACCAAGTGTATCCAAACCAAAAACCTGAATACGCAGGCTATGGTTGAAAACGGCGG
CACTTTGATTGTAGGCGGCATTTATGAAGAAGAGAACGGCAATACGCTGACCAAAGTCCCCCTGTTGGGCGACATCCCCG
TTATCGGCAACCTCTTTAAAACACGCGGGAAAAGCACCAACCGCCGCGAGCTGCTGATTTTCATTACCCCAAGGATTATG
GATACGGCCGGCAACAGCCTGCGCTATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(330-375)

Bacterial type II/III secretion system short domain (Secretin_N)

(403-474)

AMIN domain (AMIN)

(43-115)

Bacterial type II and III secretion system protein (Secretin)

(561-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis MC58

86.234

100

0.911
  pilQ Neisseria gonorrhoeae strain FA1090

90.947

100

0.909
  pilQ Neisseria meningitidis M1080

86.877

100

0.908

Multiple sequence alignment