Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   DV115_RS07910 Genome accession   NZ_CP031325
Coordinates   1417592..1418137 (-) Length   181 a.a.
NCBI ID   WP_003750267.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412592..1423137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS07895 aroB 1412879..1413958 (-) 1080 WP_115437595.1 3-dehydroquinate synthase -
  DV115_RS07900 - 1413969..1414481 (-) 513 WP_003752945.1 shikimate kinase -
  DV115_RS07905 pilQ 1415385..1417574 (-) 2190 WP_115437596.1 type IV pilus secretin PilQ Machinery gene
  DV115_RS07910 pilP 1417592..1418137 (-) 546 WP_003750267.1 pilus assembly protein PilP Machinery gene
  DV115_RS07915 - 1418155..1418817 (-) 663 WP_003750266.1 type 4a pilus biogenesis protein PilO -
  DV115_RS07920 pilN 1418818..1419417 (-) 600 WP_003750265.1 PilN domain-containing protein Machinery gene
  DV115_RS07925 pilM 1419420..1420535 (-) 1116 WP_115437597.1 type IV pilus biogenesis protein PilM -
  DV115_RS07930 - 1420688..1423084 (+) 2397 WP_003750261.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19653.04 Da        Isoelectric Point: 4.6583

>NTDB_id=305652 DV115_RS07910 WP_003750267.1 1417592..1418137(-) (pilP) [Neisseria polysaccharea strain M18661]
MKYYALFISLAALSACSQDAEDLNGWMAQTQQEAKAGIIPFQAPTLPVAPVYSPPQPTGFNAFDFHRMEAAKKGGNAPDT
KRIKETLEKFSLENIRYVGIVKSGQKVSGFVEADGYVYTVGIGNYLGQNYGKIQSITDDSIVLNELIEDGTGNWVSRRAE
LPLNASDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=305652 DV115_RS07910 WP_003750267.1 1417592..1418137(-) (pilP) [Neisseria polysaccharea strain M18661]
ATGAAATATTACGCCTTATTCATTAGCCTTGCCGCCCTATCCGCCTGTTCCCAAGATGCTGAAGACCTGAACGGGTGGAT
GGCTCAGACACAGCAGGAAGCCAAAGCAGGAATCATACCTTTCCAAGCACCGACCCTGCCGGTCGCACCAGTATACAGCC
CCCCGCAGCCGACAGGGTTCAACGCTTTCGATTTCCACCGAATGGAAGCTGCCAAAAAAGGGGGTAACGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGCTTGGAAAACATACGCTATGTCGGCATTGTGAAGTCCGGTCAGAAAGT
ATCCGGCTTCGTTGAAGCCGACGGTTATGTCTACACAGTCGGCATCGGCAACTATTTGGGACAAAATTACGGTAAAATCC
AAAGCATTACCGACGACAGCATCGTTTTGAACGAATTAATCGAAGACGGTACGGGCAACTGGGTTTCCCGCAGGGCGGAA
CTGCCTCTGAACGCTTCCGACAAAAACACCGAACAAGCGGCAGCACCCGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

85.083

100

0.851

Multiple sequence alignment