Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Smn45_RS21940 Genome accession   NZ_CP031316
Coordinates   4560058..4560588 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain N4-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4555058..4565588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Smn45_RS21905 (SmN45_4485) - 4555497..4555940 (-) 444 WP_033639278.1 lipocalin-like domain-containing protein -
  Smn45_RS21910 (SmN45_4486) bhsA 4556137..4556397 (+) 261 WP_049201479.1 multiple stress resistance protein BhsA -
  Smn45_RS21915 (SmN45_4487) - 4556453..4557370 (-) 918 WP_110158508.1 LysR family transcriptional regulator -
  Smn45_RS21920 (SmN45_4488) - 4557503..4558252 (+) 750 WP_115436565.1 3-oxoacyl-ACP reductase family protein -
  Smn45_RS21925 (SmN45_4489) - 4558290..4558766 (-) 477 WP_115436566.1 Rrf2 family transcriptional regulator -
  Smn45_RS21930 (SmN45_4490) - 4558964..4559305 (+) 342 WP_370531229.1 DUF1360 domain-containing protein -
  Smn45_RS21935 (SmN45_4491) - 4559317..4560027 (+) 711 WP_115436567.1 class I SAM-dependent methyltransferase -
  Smn45_RS21940 (SmN45_4492) ssb 4560058..4560588 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  Smn45_RS21950 (SmN45_4493) uvrA 4560866..4563694 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  Smn45_RS21955 (SmN45_4494) - 4563924..4564976 (+) 1053 WP_115436568.1 NAD(P)-dependent alcohol dehydrogenase -
  Smn45_RS21960 (SmN45_4495) maa 4565008..4565565 (-) 558 WP_115436569.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=305526 Smn45_RS21940 WP_004936793.1 4560058..4560588(-) (ssb) [Serratia marcescens strain N4-5]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=305526 Smn45_RS21940 WP_004936793.1 4560058..4560588(-) (ssb) [Serratia marcescens strain N4-5]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment