Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXA05_RS12125 Genome accession   NZ_CP035826
Coordinates   2510549..2511085 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 67-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2505549..2516085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA05_RS12105 aphA 2505837..2506550 (+) 714 WP_001226928.1 acid phosphatase AphA -
  EXA05_RS12110 yjbQ 2506661..2507077 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EXA05_RS12115 yjbR 2507081..2507437 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EXA05_RS12120 uvrA 2507472..2510294 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EXA05_RS12125 ssb 2510549..2511085 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EXA05_RS12130 yjcB 2511184..2511465 (-) 282 WP_001295689.1 YjcB family protein -
  EXA05_RS12135 pdeC 2511895..2513481 (+) 1587 WP_000019544.1 c-di-GMP phosphodiesterase PdeC -
  EXA05_RS12140 soxS 2513484..2513807 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EXA05_RS12145 soxR 2513893..2514357 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=305409 EXA05_RS12125 WP_000168305.1 2510549..2511085(+) (ssb) [Escherichia coli strain 67-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=305409 EXA05_RS12125 WP_000168305.1 2510549..2511085(+) (ssb) [Escherichia coli strain 67-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489