Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXA09_RS03435 Genome accession   NZ_CP035812
Coordinates   739765..740301 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain B7A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 734765..745301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA09_RS03415 soxR 736493..736957 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  EXA09_RS03420 soxS 737043..737366 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EXA09_RS03425 pdeC 737369..738955 (-) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  EXA09_RS03430 yjcB 739385..739666 (+) 282 WP_001295689.1 YjcB family protein -
  EXA09_RS03435 ssb 739765..740301 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EXA09_RS03440 uvrA 740555..743377 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EXA09_RS03445 yjbR 743412..743768 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EXA09_RS03450 yjbQ 743772..744188 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EXA09_RS03455 aphA 744299..745012 (-) 714 WP_001297591.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=305037 EXA09_RS03435 WP_000168305.1 739765..740301(-) (ssb) [Escherichia coli strain B7A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=305037 EXA09_RS03435 WP_000168305.1 739765..740301(-) (ssb) [Escherichia coli strain B7A]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489