Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DV378_RS00900 Genome accession   NZ_CP031249
Coordinates   191265..192794 (+) Length   509 a.a.
NCBI ID   WP_032824634.1    Uniprot ID   A0A0D0H0P9
Organism   Haemophilus influenzae strain M15895     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 186265..197794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS00875 oppC 186611..187546 (+) 936 WP_005651799.1 oligopeptide ABC transporter permease OppC -
  DV378_RS00880 - 187556..188527 (+) 972 WP_114934729.1 ABC transporter ATP-binding protein -
  DV378_RS00885 oppF 188524..189522 (+) 999 WP_050948566.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  DV378_RS00890 - 189562..190428 (-) 867 WP_050948567.1 VirK/YbjX family protein -
  DV378_RS00895 yihA 190533..191150 (+) 618 WP_005662749.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DV378_RS00900 comM 191265..192794 (+) 1530 WP_032824634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV378_RS00905 deoC 192828..193499 (-) 672 WP_112072262.1 deoxyribose-phosphate aldolase -
  DV378_RS00910 - 193609..194112 (+) 504 WP_005651783.1 protein disulfide oxidoreductase -
  DV378_RS00915 rfaD 194165..195091 (+) 927 WP_112072260.1 ADP-glyceromanno-heptose 6-epimerase -
  DV378_RS00920 xylB 195142..196623 (-) 1482 WP_162790732.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55890.40 Da        Isoelectric Point: 9.8668

>NTDB_id=304896 DV378_RS00900 WP_032824634.1 191265..192794(+) (comM) [Haemophilus influenzae strain M15895]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=304896 DV378_RS00900 WP_032824634.1 191265..192794(+) (comM) [Haemophilus influenzae strain M15895]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCGCCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTAAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGTGGGCGA
TTTGATTTGCCTATTGCTATCGGAATTTTAGCTGCATCGGATCAGCTTGATGCAAGCCGTTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGACAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCACAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCACAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
GCAACGTCCTTTTCGCGCACCACATCATAGTGCATCAATGCCAGCTTTAGTTGGTGGCGGAACGATCCCAAAACCAGGCG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTGTTAGATGCACTACGT
CAGCCTTTGGAAAGTGGCGAGATTATTATTTCTCGTGCCAATGCCAAAATTCAATTTCCAGCTCGTTTTCAATTAGTCGC
AGCGATGAATCCAAGCCCCACAGGCCATTATACTGGGACACATAACCGCACTTCACCCCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCCTTTTTAGATCGCTTTGACTTGTCTATTGAAGTGCCTTTATTGCCACAAGGCAGCTTACAAAAT
ACAGGTGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCAGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0H0P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.411

100

0.994
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment