Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DV130_RS10265 Genome accession   NZ_CP031248
Coordinates   1884167..1886005 (+) Length   612 a.a.
NCBI ID   WP_001865094.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1879167..1891005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS10245 - 1879387..1880220 (+) 834 WP_000806561.1 carbohydrate ABC transporter permease -
  DV130_RS12665 - 1880227..1880367 (+) 141 WP_050072286.1 hypothetical protein -
  DV130_RS10250 gtfA 1880566..1882008 (+) 1443 WP_114865200.1 sucrose phosphorylase -
  DV130_RS10255 - 1882146..1883339 (+) 1194 WP_000835622.1 O-antigen ligase -
  DV130_RS10265 amiA 1884167..1886005 (+) 1839 WP_001865094.1 peptide ABC transporter substrate-binding protein Regulator
  DV130_RS10270 amiC 1886072..1887568 (+) 1497 WP_000759905.1 ABC transporter permease Regulator
  DV130_RS10275 amiD 1887568..1888494 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  DV130_RS12805 - 1888503..1889569 (+) 1067 Protein_1916 ABC transporter ATP-binding protein -
  DV130_RS10285 amiF 1889580..1890506 (+) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67701.00 Da        Isoelectric Point: 4.5835

>NTDB_id=304884 DV130_RS10265 WP_001865094.1 1884167..1886005(+) (amiA) [Streptococcus pneumoniae strain M26365]
MDYLISSKNSTTVVTSNGIDGLFTNDNYGNLAPAVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKH
AADKKSEAMYLAENSVKGLADYLSGTSTDFSTVGVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAK
PTDPTSLLYNGPFLLKGLTAKSSVEFVKNEQYWDKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSSNYSKV
AEEYKDNIYYTQSGSGIAGLGVNIDRQSYNYTSKTTDSEKVATKKALLNKDFRQALNFALDRSAYSAQINGKDGAALAVR
NLFVKPDFVSAGEKTFGDLVAAQLPAYGDEWKGVNLADGQDGLFNADKAKAEFAKAKKALEADGVQFPIHLDVPVDQASK
NYISRIQSFKQSVETVLGVENVVVDIQQMTSDEFLNITYYAANASSEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTK
TYLGFDNPNSPSVVQVGLKEYDKLVDEAAKETSDLNVRYEKYAAAQAWLTDSSLFIPAMASSGAAPVLSRIVPFTGASAQ
TGSKGSDVYFKYLKLQDKVVTKEEYEKAREKWLKEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=304884 DV130_RS10265 WP_001865094.1 1884167..1886005(+) (amiA) [Streptococcus pneumoniae strain M26365]
TTGGACTACCTGATTTCAAGTAAAAATAGTACAACAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAA
TTACGGTAATCTTGCTCCTGCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTACACTTATAAGATTCGTA
AAGGGGTTAAATGGTTTACCTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACAC
GCAGCAGATAAAAAATCAGAAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATCTATCAGGAACTTC
AACAGATTTTTCAACAGTTGGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCT
GGAACTCTAAGTTGACCTATTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAA
CCAACAGATCCGACATCCTTGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGT
AAAAAATGAGCAATATTGGGATAAAGAAAATGTCCACCTAGATACTATCAATCTAGCTTACTATGATGGATCAGATCAGG
AGTCGCTAGAGCGTAACTTCACTAGTGGAGCTTATAGTTATGCCCGTCTTTACCCTACCAGCTCCAACTATTCTAAGGTT
GCAGAAGAATACAAGGACAATATCTATTACACACAATCAGGCTCTGGGATTGCTGGTCTGGGTGTGAATATTGATCGCCA
AAGTTACAACTATACTTCTAAAACTACAGATTCAGAGAAAGTAGCTACTAAGAAGGCATTGCTTAACAAAGATTTCCGTC
AAGCCTTGAATTTTGCTCTTGATCGCTCAGCTTACTCAGCTCAAATCAATGGTAAAGATGGAGCAGCTTTAGCAGTTCGT
AATTTATTTGTAAAACCAGACTTTGTTTCAGCTGGTGAGAAGACCTTTGGTGATTTAGTCGCTGCTCAACTTCCTGCTTA
TGGTGATGAGTGGAAAGGTGTGAATTTAGCTGATGGGCAGGATGGTTTATTCAATGCTGACAAGGCCAAGGCAGAGTTTG
CGAAAGCTAAGAAAGCTTTAGAAGCAGACGGCGTTCAGTTTCCTATTCATCTGGATGTTCCAGTAGACCAAGCATCAAAA
AACTACATATCTCGTATTCAGTCCTTTAAACAATCTGTAGAAACAGTTCTTGGTGTTGAAAATGTCGTTGTTGATATTCA
ACAAATGACAAGTGATGAATTCCTTAATATTACTTACTATGCTGCCAATGCTTCATCTGAGGATTGGGATGTATCGGGAG
GAGTTTCATGGGGGCCAGACTATCAAGACCCATCTACTTACCTGGATATTTTAAAAACAACTAGCAGTGAAACTACAAAA
ACATATTTAGGATTTGATAATCCAAATAGCCCTTCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGA
AGCTGCCAAAGAGACAAGCGACTTGAATGTCCGTTATGAAAAATATGCAGCGGCTCAAGCATGGTTGACAGATAGTTCAC
TCTTTATTCCTGCTATGGCTTCTTCTGGTGCAGCACCAGTGCTTTCACGAATTGTTCCATTTACTGGAGCTTCTGCGCAA
ACAGGCTCTAAGGGGTCAGATGTTTACTTCAAATATTTGAAATTACAAGATAAAGTAGTGACTAAGGAAGAGTATGAAAA
AGCTCGTGAAAAATGGTTGAAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(31-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.974

100

0.68
  amiA3 Streptococcus thermophilus LMD-9

67.863

100

0.68
  amiA3 Streptococcus thermophilus LMG 18311

67.7

100

0.678

Multiple sequence alignment