Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | EW648_RS09425 | Genome accession | NZ_CP035772 |
| Coordinates | 1929893..1930369 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli O145 strain RM8843-C1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1924893..1935369
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW648_RS09405 (EW648_09705) | - | 1926171..1927076 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| EW648_RS09410 (EW648_09710) | - | 1927073..1928143 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| EW648_RS09415 (EW648_09720) | - | 1928483..1929301 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| EW648_RS09420 (EW648_09725) | - | 1929392..1929877 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| EW648_RS09425 (EW648_09730) | radC | 1929893..1930369 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| EW648_RS09430 (EW648_09735) | - | 1930432..1930653 (+) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| EW648_RS09435 (EW648_09740) | - | 1930816..1931190 (+) | 375 | WP_001280953.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| EW648_RS09440 (EW648_09745) | - | 1931237..1931611 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| EW648_RS09445 (EW648_09750) | - | 1931608..1932099 (+) | 492 | WP_000976857.1 | DUF5983 family protein | - |
| EW648_RS09450 (EW648_09755) | - | 1932111..1932308 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| EW648_RS09455 (EW648_09760) | - | 1932393..1933235 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| EW648_RS09465 (EW648_09770) | ghrA | 1933706..1934644 (+) | 939 | WP_000351301.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=304886 EW648_RS09425 WP_001186738.1 1929893..1930369(+) (radC) [Escherichia coli O145 strain RM8843-C1]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=304886 EW648_RS09425 WP_001186738.1 1929893..1930369(+) (radC) [Escherichia coli O145 strain RM8843-C1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |