Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DV130_RS10285 Genome accession   NZ_CP031248
Coordinates   1889580..1890506 (+) Length   308 a.a.
NCBI ID   WP_001291296.1    Uniprot ID   A0A0T8U5M2
Organism   Streptococcus pneumoniae strain M26365     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884580..1895506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS10270 amiC 1886072..1887568 (+) 1497 WP_000759905.1 ABC transporter permease Regulator
  DV130_RS10275 amiD 1887568..1888494 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  DV130_RS12805 - 1888503..1889569 (+) 1067 Protein_1916 ABC transporter ATP-binding protein -
  DV130_RS10285 amiF 1889580..1890506 (+) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  DV130_RS12680 - 1890997..1891935 (+) 939 Protein_1918 ABC transporter substrate-binding protein -
  DV130_RS10300 - 1891947..1892824 (+) 878 Protein_1919 ABC transporter permease -
  DV130_RS10305 - 1892837..1893640 (+) 804 WP_000157674.1 ATP-binding cassette domain-containing protein -
  DV130_RS10310 treR 1893673..1894383 (-) 711 WP_000760673.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34769.82 Da        Isoelectric Point: 6.6224

>NTDB_id=304887 DV130_RS10285 WP_001291296.1 1889580..1890506(+) (amiF) [Streptococcus pneumoniae strain M26365]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQSIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=304887 DV130_RS10285 WP_001291296.1 1889580..1890506(+) (amiF) [Streptococcus pneumoniae strain M26365]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAGTATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCTTGACCTATCTCTTCATCGCTCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCAGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T8U5M2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment