Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DV130_RS10310 Genome accession   NZ_CP031248
Coordinates   1893673..1894383 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain M26365     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888673..1899383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS10285 amiF 1889580..1890506 (+) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  DV130_RS12680 - 1890997..1891935 (+) 939 Protein_1918 ABC transporter substrate-binding protein -
  DV130_RS10300 - 1891947..1892824 (+) 878 Protein_1919 ABC transporter permease -
  DV130_RS10305 - 1892837..1893640 (+) 804 WP_000157674.1 ATP-binding cassette domain-containing protein -
  DV130_RS10310 treR 1893673..1894383 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  DV130_RS10315 treP 1894568..1896535 (+) 1968 WP_042516390.1 PTS system trehalose-specific EIIBC component -
  DV130_RS10325 treC 1896713..1898338 (+) 1626 WP_000171203.1 alpha,alpha-phosphotrehalase -
  DV130_RS10330 - 1898594..1898842 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=304888 DV130_RS10310 WP_000760673.1 1893673..1894383(-) (treR) [Streptococcus pneumoniae strain M26365]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=304888 DV130_RS10310 WP_000760673.1 1893673..1894383(-) (treR) [Streptococcus pneumoniae strain M26365]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment