Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DV129_RS09175 | Genome accession | NZ_CP031247 |
| Coordinates | 1692320..1693273 (+) | Length | 317 a.a. |
| NCBI ID | WP_000345116.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain M23734 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1687320..1698273
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV129_RS09125 | - | 1687377..1687742 (+) | 366 | WP_000286415.1 | DUF1033 family protein | - |
| DV129_RS09130 | comGA/cglA/cilD | 1687818..1688759 (+) | 942 | WP_000249571.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DV129_RS09135 | comGB/cglB | 1688707..1689723 (+) | 1017 | WP_001844679.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DV129_RS09140 | comGC/cglC | 1689725..1690051 (+) | 327 | WP_000738633.1 | comG operon protein ComGC | Machinery gene |
| DV129_RS09145 | comGD/cglD | 1690044..1690448 (+) | 405 | WP_000588020.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DV129_RS09150 | comGE/cglE | 1690411..1690713 (+) | 303 | WP_000413382.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DV129_RS09155 | comGF/cglF | 1690676..1691137 (+) | 462 | WP_000250531.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DV129_RS09160 | comGG/cglG | 1691115..1691528 (+) | 414 | WP_000265631.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| DV129_RS09170 | - | 1691665..1692259 (+) | 595 | Protein_1712 | methyltransferase domain-containing protein | - |
| DV129_RS09175 | comYH | 1692320..1693273 (+) | 954 | WP_000345116.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DV129_RS09180 | - | 1693324..1694514 (+) | 1191 | WP_000167766.1 | acetate kinase | - |
| DV129_RS12550 | - | 1694515..1694646 (+) | 132 | WP_000768904.1 | hypothetical protein | - |
| DV129_RS09185 | rnpA | 1694663..1695034 (+) | 372 | WP_000739246.1 | ribonuclease P protein component | - |
| DV129_RS09190 | - | 1695009..1695833 (+) | 825 | WP_000727904.1 | membrane protein insertase YidC | - |
| DV129_RS09195 | jag | 1695852..1696838 (+) | 987 | WP_000260015.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| DV129_RS09200 | - | 1696889..1697512 (+) | 624 | WP_000932635.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35623.84 Da Isoelectric Point: 4.3256
>NTDB_id=304796 DV129_RS09175 WP_000345116.1 1692320..1693273(+) (comYH) [Streptococcus pneumoniae strain M23734]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKHLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKHLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=304796 DV129_RS09175 WP_000345116.1 1692320..1693273(+) (comYH) [Streptococcus pneumoniae strain M23734]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCATTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCATTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
54.952 |
98.738 |
0.543 |
| comYH | Streptococcus mutans UA159 |
54.633 |
98.738 |
0.539 |