Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   DV131_RS05610 Genome accession   NZ_CP031246
Coordinates   1029285..1030022 (+) Length   245 a.a.
NCBI ID   WP_001219147.1    Uniprot ID   B1IA60
Organism   Streptococcus pneumoniae strain M26368     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1024285..1035022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS11300 - 1025214..1025453 (-) 240 WP_001813906.1 hypothetical protein -
  DV131_RS05580 - 1025615..1025902 (-) 288 WP_000777760.1 hypothetical protein -
  DV131_RS05585 - 1025912..1026322 (-) 411 WP_001278301.1 HIT family protein -
  DV131_RS05590 pptA 1026390..1027121 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  DV131_RS05595 - 1027118..1028167 (+) 1050 WP_050213819.1 ABC transporter permease -
  DV131_RS05600 - 1028335..1028664 (-) 330 WP_000132572.1 hypothetical protein -
  DV131_RS05605 - 1028942..1029280 (+) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  DV131_RS05610 comE/blpR 1029285..1030022 (+) 738 WP_001219147.1 response regulator transcription factor Regulator
  DV131_RS05615 - 1030036..1031376 (+) 1341 WP_050213946.1 sensor histidine kinase -
  DV131_RS05620 blpC 1031418..1031573 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  DV131_RS05625 - 1031630..1032991 (-) 1362 WP_050213945.1 bacteriocin secretion accessory protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28828.93 Da        Isoelectric Point: 6.0454

>NTDB_id=304713 DV131_RS05610 WP_001219147.1 1029285..1030022(+) (comE/blpR) [Streptococcus pneumoniae strain M26368]
MRIFVLEDDFSQQTRIETTIEKLLKEHHITPSSFEVFGKPDQLLAEVHEKGAHQLFFLDIEIRNEEMKGLEVARKIREQD
PYALIVFVTTHSEFMPLSFRYQVSALDYIDKALSTEEFESRIETALLYANSQDSKSLAEDCFYFKSKFAQFQYPFKEVYY
LETSPRPHRVILYTKTDRLEFTASLEEVFKQEPRLLQCHRSFLINPANVVHLDKKEKLLFFPNGGSCLIARYKVREVSEA
INNLH

Nucleotide


Download         Length: 738 bp        

>NTDB_id=304713 DV131_RS05610 WP_001219147.1 1029285..1030022(+) (comE/blpR) [Streptococcus pneumoniae strain M26368]
ATGAGAATATTTGTTTTAGAGGATGATTTTTCCCAACAGACTAGGATTGAAACGACGATTGAGAAACTCTTGAAGGAACA
TCATATCACTCCCAGCTCTTTTGAGGTATTTGGCAAGCCAGACCAACTGCTGGCAGAGGTGCATGAGAAGGGGGCCCATC
AGCTATTCTTTTTGGATATTGAGATTCGAAATGAGGAGATGAAGGGGCTGGAAGTGGCTAGAAAGATTCGGGAACAAGAC
CCCTATGCCCTGATTGTCTTTGTGACGACTCACTCGGAGTTTATGCCCCTGTCCTTTCGCTACCAAGTGTCTGCTCTGGA
CTATATTGATAAGGCCCTTTCGACAGAGGAGTTTGAATCTCGAATCGAGACAGCCCTCCTCTATGCCAATAGTCAAGATA
GTAAAAGTCTGGCGGAAGATTGCTTTTACTTTAAATCAAAATTTGCCCAATTTCAGTATCCTTTTAAAGAGGTTTACTAT
CTCGAAACATCCCCAAGACCCCATCGTGTTATTCTCTATACCAAGACAGACAGGCTGGAATTTACAGCGAGTTTAGAGGA
GGTTTTCAAGCAGGAACCCCGTCTCTTGCAGTGCCATCGCTCTTTTCTCATCAATCCTGCAAATGTGGTGCATTTGGATA
AGAAAGAAAAACTCCTTTTCTTTCCCAATGGTGGAAGTTGTCTGATCGCGCGTTATAAGGTCAGGGAAGTGTCTGAGGCT
ATTAATAACTTACACTGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-241)

Response regulator receiver domain (Response_reg)

(3-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1IA60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

54.321

99.184

0.539
  comE/comE1 Streptococcus equinus JB1

43.882

96.735

0.424
  comE/comE2 Streptococcus equinus JB1

38.843

98.776

0.384
  comE Streptococcus infantis strain Atu-4

36.179

100

0.363

Multiple sequence alignment