Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DV131_RS05590 Genome accession   NZ_CP031246
Coordinates   1026390..1027121 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26368     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1021390..1032121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS11295 - 1022953..1023586 (+) 634 Protein_1008 DJ-1/PfpI family protein -
  DV131_RS05570 dnaJ 1023756..1024892 (+) 1137 WP_001066288.1 molecular chaperone DnaJ -
  DV131_RS11300 - 1025214..1025453 (-) 240 WP_001813906.1 hypothetical protein -
  DV131_RS05580 - 1025615..1025902 (-) 288 WP_000777760.1 hypothetical protein -
  DV131_RS05585 - 1025912..1026322 (-) 411 WP_001278301.1 HIT family protein -
  DV131_RS05590 pptA 1026390..1027121 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  DV131_RS05595 - 1027118..1028167 (+) 1050 WP_050213819.1 ABC transporter permease -
  DV131_RS05600 - 1028335..1028664 (-) 330 WP_000132572.1 hypothetical protein -
  DV131_RS05605 - 1028942..1029280 (+) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  DV131_RS05610 comE/blpR 1029285..1030022 (+) 738 WP_001219147.1 response regulator transcription factor Regulator
  DV131_RS05615 - 1030036..1031376 (+) 1341 WP_050213946.1 sensor histidine kinase -
  DV131_RS05620 blpC 1031418..1031573 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=304712 DV131_RS05590 WP_000889923.1 1026390..1027121(+) (pptA) [Streptococcus pneumoniae strain M26368]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=304712 DV131_RS05590 WP_000889923.1 1026390..1027121(+) (pptA) [Streptococcus pneumoniae strain M26368]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGCTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCATGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment