Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CCE_RS02145 Genome accession   NC_010546
Coordinates   453652..454017 (-) Length   121 a.a.
NCBI ID   WP_009546533.1    Uniprot ID   B1WNF5
Organism   Crocosphaera subtropica ATCC 51142     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448652..459017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCE_RS02130 (cce_0443) - 449436..450134 (-) 699 WP_009546530.1 DUF2993 domain-containing protein -
  CCE_RS02135 (cce_0444) pilJ 450239..452986 (-) 2748 WP_009546531.1 methyl-accepting chemotaxis protein Machinery gene
  CCE_RS02140 (cce_0445) - 453091..453621 (-) 531 WP_009546532.1 chemotaxis protein CheW -
  CCE_RS02145 (cce_0446) pilH 453652..454017 (-) 366 WP_009546533.1 response regulator Machinery gene
  CCE_RS02150 (cce_0448) - 454271..455503 (-) 1233 WP_009546534.1 response regulator -
  CCE_RS02155 (cce_0449) hmpF 456372..457979 (+) 1608 WP_009546535.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13647.91 Da        Isoelectric Point: 4.8778

>NTDB_id=30461 CCE_RS02145 WP_009546533.1 453652..454017(-) (pilH) [Crocosphaera subtropica ATCC 51142]
MRAVLLVEDSPAQQRMIATILKKNGWQVIIAEDGIQALETIKEASPDLIVLDIVMPKMNGYEVCRRIKTNPSTQNVPIVM
CSSKGEEFDRYWGIKQGADAYIAKPFEDIELIGTIQQLLRQ

Nucleotide


Download         Length: 366 bp        

>NTDB_id=30461 CCE_RS02145 WP_009546533.1 453652..454017(-) (pilH) [Crocosphaera subtropica ATCC 51142]
ATGAGAGCAGTTCTACTGGTAGAAGATAGTCCAGCACAACAAAGAATGATTGCGACGATTCTCAAAAAGAATGGTTGGCA
AGTCATTATCGCAGAAGATGGCATTCAAGCCCTCGAAACCATTAAAGAAGCGAGTCCGGATCTCATTGTCTTAGATATTG
TCATGCCCAAGATGAACGGTTATGAAGTCTGTCGTCGGATTAAAACCAATCCGAGTACCCAAAATGTTCCCATTGTTATG
TGTTCTTCTAAAGGGGAAGAATTCGACCGTTATTGGGGTATTAAACAGGGGGCAGATGCTTACATTGCCAAACCCTTTGA
AGATATTGAACTCATTGGCACCATTCAGCAACTACTACGGCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.074

100

0.711
  vicR Streptococcus mutans UA159

38.843

100

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  micA Streptococcus pneumoniae Cp1015

38.017

100

0.38

Multiple sequence alignment