Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | CCE_RS01370 | Genome accession | NC_010546 |
| Coordinates | 281433..281801 (-) | Length | 122 a.a. |
| NCBI ID | WP_009546782.1 | Uniprot ID | B1X0Z9 |
| Organism | Crocosphaera subtropica ATCC 51142 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 276433..286801
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCE_RS01355 (cce_0286) | - | 276901..277725 (-) | 825 | WP_009546779.1 | carbohydrate ABC transporter permease | - |
| CCE_RS01360 (cce_0287) | - | 277792..279153 (-) | 1362 | WP_009546780.1 | proton extrusion protein PcxA | - |
| CCE_RS01365 (cce_0288) | - | 279256..281424 (+) | 2169 | WP_009546781.1 | hypothetical protein | - |
| CCE_RS01370 (cce_0289) | pilH | 281433..281801 (-) | 369 | WP_009546782.1 | response regulator | Machinery gene |
| CCE_RS01375 (cce_0290) | rpsU | 282035..282217 (-) | 183 | WP_007307443.1 | 30S ribosomal protein S21 | - |
| CCE_RS01380 (cce_0291) | - | 282358..284520 (-) | 2163 | WP_009546783.1 | IMS domain-containing protein | - |
| CCE_RS01385 (cce_0292) | pdhA | 284872..285903 (+) | 1032 | WP_009546784.1 | pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha | - |
Sequence
Protein
Download Length: 122 a.a. Molecular weight: 13355.44 Da Isoelectric Point: 5.1114
>NTDB_id=30457 CCE_RS01370 WP_009546782.1 281433..281801(-) (pilH) [Crocosphaera subtropica ATCC 51142]
MPTILLADDSTAQRELIAGLLTDNGFSVTTAMDGAEALEKLKSLAPDLIILDVVMPKLNGYQTCRSIKSDPKTEHIPVIL
CSTKNTQVDSYWGLKQGADAYIIKPFPHEELLGTVKQLLRNS
MPTILLADDSTAQRELIAGLLTDNGFSVTTAMDGAEALEKLKSLAPDLIILDVVMPKLNGYQTCRSIKSDPKTEHIPVIL
CSTKNTQVDSYWGLKQGADAYIIKPFPHEELLGTVKQLLRNS
Nucleotide
Download Length: 369 bp
>NTDB_id=30457 CCE_RS01370 WP_009546782.1 281433..281801(-) (pilH) [Crocosphaera subtropica ATCC 51142]
ATGCCTACAATTTTACTAGCCGATGATAGCACTGCTCAACGTGAACTGATTGCTGGTTTACTTACAGATAATGGTTTTTC
TGTTACCACAGCCATGGATGGGGCTGAAGCTTTAGAAAAGTTAAAATCCCTTGCGCCTGATCTGATTATTCTTGATGTGG
TTATGCCTAAGCTTAATGGTTATCAGACTTGTCGGAGTATTAAAAGTGATCCGAAAACAGAGCATATTCCTGTCATTCTT
TGTTCAACTAAAAACACTCAAGTTGATAGTTACTGGGGTTTAAAACAGGGGGCCGATGCTTATATTATTAAGCCATTTCC
TCACGAGGAGTTATTAGGAACAGTGAAACAATTGTTAAGAAATTCCTAA
ATGCCTACAATTTTACTAGCCGATGATAGCACTGCTCAACGTGAACTGATTGCTGGTTTACTTACAGATAATGGTTTTTC
TGTTACCACAGCCATGGATGGGGCTGAAGCTTTAGAAAAGTTAAAATCCCTTGCGCCTGATCTGATTATTCTTGATGTGG
TTATGCCTAAGCTTAATGGTTATCAGACTTGTCGGAGTATTAAAAGTGATCCGAAAACAGAGCATATTCCTGTCATTCTT
TGTTCAACTAAAAACACTCAAGTTGATAGTTACTGGGGTTTAAAACAGGGGGCCGATGCTTATATTATTAAGCCATTTCC
TCACGAGGAGTTATTAGGAACAGTGAAACAATTGTTAAGAAATTCCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
60.331 |
99.18 |
0.598 |
| vicR | Streptococcus mutans UA159 |
40.164 |
100 |
0.402 |
| micA | Streptococcus pneumoniae Cp1015 |
39.344 |
100 |
0.393 |
| pilG | Acinetobacter baumannii strain A118 |
40.708 |
92.623 |
0.377 |