Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DV427_RS04505 Genome accession   NZ_CP031240
Coordinates   899915..901444 (-) Length   509 a.a.
NCBI ID   WP_114891449.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19345     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 894915..906444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS04480 - 895580..896485 (-) 906 WP_114891445.1 DMT family transporter -
  DV427_RS04485 waaF 896482..897522 (-) 1041 WP_114891446.1 lipopolysaccharide heptosyltransferase II -
  DV427_RS04490 rfaD 897608..898534 (-) 927 WP_005636304.1 ADP-glyceromanno-heptose 6-epimerase -
  DV427_RS04495 - 898587..899090 (-) 504 WP_114891447.1 protein disulfide oxidoreductase -
  DV427_RS04500 deoC 899207..899878 (+) 672 WP_114891448.1 deoxyribose-phosphate aldolase -
  DV427_RS04505 comM 899915..901444 (-) 1530 WP_114891449.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV427_RS04510 yihA 901560..902177 (-) 618 WP_114891450.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DV427_RS04515 - 902281..903147 (+) 867 WP_162790261.1 VirK/YbjX family protein -
  DV427_RS04520 tal 903271..904224 (+) 954 WP_114891451.1 transaldolase -
  DV427_RS04525 aspA 904312..905730 (-) 1419 WP_009500795.1 aspartate ammonia-lyase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55879.33 Da        Isoelectric Point: 9.7771

>NTDB_id=304473 DV427_RS04505 WP_114891449.1 899915..901444(-) (comM) [Haemophilus haemolyticus strain M19345]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGLIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERSGKINAYLNSKEIERDCKLSDKDAFFLENALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=304473 DV427_RS04505 WP_114891449.1 899915..901444(-) (comM) [Haemophilus haemolyticus strain M19345]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTTGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCCGAAAAAACGGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAACGTATCACAGTGAATCTCGCCCCTGCAGATTTACCGAAAGAAGGTGGACGA
TTTGATTTGCCTATTGCCATCGGAATTTTAGCCGCATCAGATCAGCTTGATGCGAGCCGTTTAAAGCAATTTGAATTTGT
GGCTGAGCTTGCGCTGACGGGGCAATTACGTGGCGTTCATGGTCTAATTCCCGCTATTCTTGCGGCGCAAAAGTCAAAGC
GAGAATTAATTATCGCGAAGCAAAATGCGAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCGCAAACGCTT
TTAGATGTAGTTCAATTTCTCAATGGTCAGGAAAAATTACCTCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACATTAGATTTAACGGATATTATCGGACAACAACACGCCAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGGAAAACCATGTTAGCTAGCCGATTGACAGGGCTTTTACCC
GAAATGACCGATCTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAGCGTCCTTTTCGCGCACCACATCATAGTGCATCAATGCCGGCTTTAGTTGGAGGTGGAACGATCCCAAAACCTGGTG
AAATATCCTTAGCAACAAATGGCGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAGGTGTTAGATGCACTACGT
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCCAAAATCCAATTTCCAGCTCGTTTTCAATTGGTGGC
AGCGATGAATCCAAGTCCGACAGGCCATTATACGGGGACTCATAACCGAACTTCACCCCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTCGATTTGTCTATTGAAGTACCTTTATTGCCACAAGGAAGCTTACAAAAT
ACCGGCGATCGTGGCGAAACCAGCGCGCAAGTACGAGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGATCGGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAACGTGATTGCAAGTTAAGTGATAAAGATGCCTTTTTCCTTGAAA
ATGCGCTGAATAAACTAGGGCTTTCTGTTCGGGCTTACCATCGTATTCTGAAAGTTTCTCGAACCATTGCTGATTTGCAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCTATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.625

100

0.986
  comM Glaesserella parasuis strain SC1401

79.29

99.607

0.79
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.272

99.607

0.66
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.796

100

0.473

Multiple sequence alignment