Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCHO_RS19635 Genome accession   NC_010524
Coordinates   4420559..4422073 (+) Length   504 a.a.
NCBI ID   WP_012348942.1    Uniprot ID   B1Y8D1
Organism   Leptothrix cholodnii SP-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4415559..4427073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCHO_RS19610 (Lcho_3938) rplX 4416038..4416355 (-) 318 WP_012348937.1 50S ribosomal protein L24 -
  LCHO_RS19615 (Lcho_3939) rplN 4416377..4416745 (-) 369 WP_012348938.1 50S ribosomal protein L14 -
  LCHO_RS19620 (Lcho_3940) gshA 4416977..4418272 (-) 1296 WP_012348939.1 glutamate--cysteine ligase -
  LCHO_RS19625 (Lcho_3941) - 4418402..4419916 (-) 1515 WP_012348940.1 ammonium transporter -
  LCHO_RS19630 (Lcho_3942) - 4419939..4420277 (-) 339 WP_012348941.1 P-II family nitrogen regulator -
  LCHO_RS19635 (Lcho_3943) comM 4420559..4422073 (+) 1515 WP_012348942.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCHO_RS19640 (Lcho_3944) - 4422139..4422882 (+) 744 WP_012348943.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LCHO_RS19645 (Lcho_3945) - 4423121..4424995 (+) 1875 WP_012348944.1 phosphoenolpyruvate carboxykinase (GTP) -
  LCHO_RS19650 (Lcho_3946) - 4425078..4425320 (-) 243 WP_012348945.1 hypothetical protein -
  LCHO_RS19655 (Lcho_3947) - 4425458..4426423 (+) 966 WP_012348946.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53176.15 Da        Isoelectric Point: 8.3363

>NTDB_id=30446 LCHO_RS19635 WP_012348942.1 4420559..4422073(+) (comM) [Leptothrix cholodnii SP-6]
MSLAVVHSRALIGLQAPDVTVEVHLANGLPSFTLVGLADTEVKEARERVRAALQNSGLEFPHNKRITVNLAPADLPKEGG
RFDLPIAIGILAASGQVSSAGLDGLEFAGELSLAGDLRPVRGALAMALALQRSPTARCLVLPQYSAREAARVQGLRLRCA
SHLLDVVAALQDGELAQPLSEPKPFETGAAPALPDLRDVKGQAGAKRALELAAAGSHSLLFVGPPGTGKSMLAQRLAGLL
PPLDESEALESAAILSLAGQFDARLWATRVMRSPHHTASSVALVGGGSPPRPGEISLAHHGVLFLDELPEFPRTALEALR
EPLENGRITISRAARQAEFPARCQLVAAMNPCACGQLGASTRACRCSPEQVRRYQARLSGPLLDRIDLRVEVLAIPPQAL
SAIADGEPSAVIAERVAHARERQMRRQGCANSALHAAQLDEQIRALPAAREFLDAAASRLGWSGRSLHRVLRVARTAADL
AGAADVQVVHVAEAIQLRRALPGV

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=30446 LCHO_RS19635 WP_012348942.1 4420559..4422073(+) (comM) [Leptothrix cholodnii SP-6]
ATGTCGCTTGCCGTCGTCCACAGCCGTGCCCTGATCGGGCTCCAGGCACCCGATGTCACCGTCGAGGTGCATCTCGCCAA
TGGCCTGCCCAGCTTCACGCTGGTCGGACTGGCCGACACCGAAGTCAAGGAGGCCCGCGAACGGGTTCGCGCCGCGCTGC
AGAACAGCGGCCTGGAGTTCCCGCACAACAAGCGCATCACCGTCAACCTGGCGCCGGCCGATCTGCCCAAGGAGGGCGGA
CGCTTCGACCTGCCGATCGCGATCGGCATCCTCGCCGCCAGCGGGCAGGTCAGCAGCGCCGGCCTCGACGGCCTGGAGTT
CGCCGGCGAGCTCTCGCTCGCAGGCGACCTGCGGCCGGTGCGCGGCGCGTTGGCGATGGCCCTGGCGTTGCAGCGCTCGC
CGACCGCGCGCTGCCTGGTGCTGCCGCAGTACAGTGCCCGCGAGGCCGCCCGCGTGCAAGGATTGCGGCTGCGTTGCGCC
AGCCATCTGCTCGATGTCGTCGCGGCATTGCAGGACGGCGAACTCGCGCAACCCTTGTCCGAACCCAAGCCGTTCGAGAC
CGGCGCGGCACCGGCACTGCCGGATCTGCGTGACGTCAAAGGCCAGGCCGGCGCCAAGCGGGCGCTGGAGCTGGCCGCGG
CCGGATCGCACAGCCTGCTGTTCGTGGGGCCGCCGGGCACCGGCAAGTCGATGCTGGCGCAGCGCCTGGCCGGCCTGCTG
CCACCGCTCGACGAGTCCGAGGCACTGGAGTCGGCCGCCATCCTGAGCCTGGCCGGCCAGTTCGACGCCCGCCTCTGGGC
CACGCGCGTGATGCGTTCGCCGCATCACACGGCGTCGTCGGTGGCGCTGGTCGGCGGCGGCTCGCCACCGCGGCCGGGCG
AGATTTCGCTGGCGCACCACGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTTCCCGCGAACCGCCCTCGAGGCGCTGCGA
GAGCCACTCGAAAACGGCCGCATCACGATCTCGCGCGCGGCCCGCCAGGCCGAGTTTCCGGCCCGATGCCAGCTGGTGGC
AGCGATGAATCCGTGCGCCTGCGGACAACTCGGCGCCAGCACCCGGGCCTGCCGCTGCTCGCCTGAACAGGTCCGGCGCT
ACCAGGCCCGGCTGTCGGGGCCGCTGCTCGACCGCATCGACCTGCGTGTCGAGGTGCTGGCGATCCCGCCGCAGGCGCTG
TCGGCGATTGCCGATGGCGAACCCAGCGCCGTGATCGCCGAGCGGGTCGCACACGCGCGTGAACGCCAGATGCGGCGCCA
GGGCTGCGCCAACAGCGCCTTGCACGCCGCCCAGCTCGACGAGCAGATCCGCGCCCTGCCCGCCGCACGCGAGTTCCTGG
ATGCCGCAGCGTCGCGCCTCGGCTGGTCGGGCCGCAGCCTGCACCGGGTCTTGCGCGTGGCCCGCACGGCCGCCGACCTG
GCAGGCGCCGCCGACGTCCAGGTGGTGCACGTGGCCGAGGCGATCCAGCTGCGGCGCGCCCTGCCCGGCGTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1Y8D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.6

99.206

0.522
  comM Haemophilus influenzae Rd KW20

51.491

99.802

0.514
  comM Glaesserella parasuis strain SC1401

50.984

100

0.514
  comM Vibrio campbellii strain DS40M4

51

99.206

0.506
  comM Legionella pneumophila str. Paris

48.611

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.611

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

100

0.44

Multiple sequence alignment