Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DV441_RS03085 Genome accession   NZ_CP031238
Coordinates   671683..673212 (+) Length   509 a.a.
NCBI ID   WP_005626812.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M28486     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 666683..678212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV441_RS03065 aspA 667398..668816 (+) 1419 WP_005626805.1 aspartate ammonia-lyase -
  DV441_RS03070 tal 668904..669857 (-) 954 WP_005626807.1 transaldolase -
  DV441_RS03075 - 669981..670847 (-) 867 WP_032825503.1 VirK/YbjX family protein -
  DV441_RS03080 yihA 670951..671568 (+) 618 WP_005626810.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DV441_RS03085 comM 671683..673212 (+) 1530 WP_005626812.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV441_RS03090 deoC 673246..673920 (-) 675 WP_114892433.1 deoxyribose-phosphate aldolase -
  DV441_RS03095 - 674030..674533 (+) 504 WP_005626817.1 protein disulfide oxidoreductase -
  DV441_RS03100 rfaD 674586..675512 (+) 927 WP_005626818.1 ADP-glyceromanno-heptose 6-epimerase -
  DV441_RS03105 waaF 675598..676641 (+) 1044 WP_005626820.1 lipopolysaccharide heptosyltransferase II -
  DV441_RS03110 - 676659..677240 (+) 582 WP_046952597.1 YcxB family protein -
  DV441_RS03115 - 677269..678174 (+) 906 WP_005626824.1 DMT family transporter -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55893.41 Da        Isoelectric Point: 9.7771

>NTDB_id=304386 DV441_RS03085 WP_005626812.1 671683..673212(+) (comM) [Haemophilus haemolyticus strain M28486]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNMLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQIREKVLKVREIQMERAGKINAYLNSKEIERDCKLSDKDAFFLENALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=304386 DV441_RS03085 WP_005626812.1 671683..673212(+) (comM) [Haemophilus haemolyticus strain M28486]
ATGTCCCTTGCTATTGTTTACAGCCGTGCCTCTATGGGTGTACAAGCGCCGCTTGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCCGAAAAAACAGTGAAAGAGGCGCAAGATCGGGTGCGTAGTGCATTGA
TGAATGCACAATTTAAATACCCAGCCAAACGCATTACCGTGAATCTCGCACCTGCAGATTTACCGAAAGAAGGTGGACGA
TTTGATTTGCCTATTGCCATCGGAATTTTAGCCGCATCGGATCAGCTTGATGCGAGTCGATTAAAGCAATTTGAATTTGT
GGCGGAGCTTGCGCTGACGGGGCAATTACGTGGGGTTCATGGTGTAATTCCCGCTATTCTTGCTGCGCAAAAGTCAAAAC
GAGAGTTAATTATCGCGAAGCAAAATGCGAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCGCAAACGCTT
TTAGACGTGGTGCAATTTCTTAATGGTCAAGAAAAATTACCCCTTGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCGGGCAAAAATATGTTAGATTTAACGGATATTATCGGACAACAACACGCCAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATTTGCTCTTTCTTGGTCCGCCAGGTACAGGGAAAACCATGCTAGCTAGCCGTTTGACGGGGCTTTTACCT
GAAATGACAGATCTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAATGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCACCACATCATAGTGCATCAATGCCAGCTTTAGTTGGCGGTGGGACGATCCCTAAACCTGGTG
AAATATCCTTAGCAACAAATGGTGTACTTTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTATTGGACGCGCTACGT
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCCAAAATCCAATTCCCGGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGTCCGACAGGCCATTATACTGGGACACATAACCGCACTTCACCCCAGCAAATTATGCGTTATTTGA
ATAGACTTTCAGGGCCTTTTTTAGATCGTTTTGATTTATCTATTGAAGTACCTTTACTGCCACAAGGCAGCTTACAAAAT
ACAGGTGATCGTGGTGAAACCAGTGCTCAAATTCGTGAGAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCTGG
GAAAATTAACGCGTATTTGAACAGTAAAGAGATTGAACGTGATTGCAAGTTAAGTGATAAAGATGCCTTTTTCCTTGAAA
ATGCGCTGAATAAACTGGGGCTTTCTGTACGGGCTTACCATCGTATTTTGAAAGTTTCTCGAACCATTGCTGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTAGCGGAAGCTTTGGGGTATCGAGCAATGGATCGTTTGTTGCAGAAATTGTC
TAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.625

100

0.986
  comM Glaesserella parasuis strain SC1401

79.29

99.607

0.79
  comM Vibrio cholerae strain A1552

67.061

99.607

0.668
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.292

98.821

0.507
  comM Legionella pneumophila strain ERS1305867

51.292

98.821

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.276

100

0.477

Multiple sequence alignment