Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV441_RS02770 Genome accession   NZ_CP031238
Coordinates   606971..607318 (-) Length   115 a.a.
NCBI ID   WP_162790464.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M28486     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 601971..612318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV441_RS02745 thiQ 602780..603427 (-) 648 WP_046952900.1 thiamine ABC transporter ATP-binding protein -
  DV441_RS02750 thiP 603411..605027 (-) 1617 WP_114892402.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DV441_RS02755 thiB 605032..606030 (-) 999 WP_114892403.1 thiamine ABC transporter substrate binding subunit -
  DV441_RS02760 - 606259..606450 (-) 192 WP_114892404.1 hypothetical protein -
  DV441_RS02765 - 606558..606929 (+) 372 WP_114892405.1 CopM family metallochaperone -
  DV441_RS02770 comE1/comEA 606971..607318 (-) 348 WP_162790464.1 ComEA family DNA-binding protein Machinery gene
  DV441_RS02775 ispH 607489..608433 (-) 945 WP_005634483.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV441_RS02780 lspA 608430..608945 (-) 516 WP_114892406.1 signal peptidase II -
  DV441_RS02785 - 609015..610571 (-) 1557 WP_114892407.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12361.10 Da        Isoelectric Point: 8.0102

>NTDB_id=304385 DV441_RS02770 WP_162790464.1 606971..607318(-) (comE1/comEA) [Haemophilus haemolyticus strain M28486]
MKLMKTLFTSMVLCGALVASSSFAEEKATEQTAQPVVATQTEAQVASATVNDKLNINTATASEIQKALTGIGAKKAEAIV
QYREKHGNFTSAEQLLEVQGIGKATLERNRDRITF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304385 DV441_RS02770 WP_162790464.1 606971..607318(-) (comE1/comEA) [Haemophilus haemolyticus strain M28486]
ATGAAATTAATGAAAACATTATTTACTTCGATGGTATTGTGTGGTGCGCTTGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCAACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAACTGAGGCTCAAGTAGCATCAGCTACTGTGAATGATAAAT
TGAATATCAATACGGCAACTGCGAGTGAAATTCAAAAAGCCTTAACTGGAATTGGTGCGAAAAAAGCAGAAGCGATTGTG
CAATATCGTGAAAAACACGGTAATTTCACGAGTGCTGAACAACTATTAGAAGTGCAAGGGATTGGTAAAGCAACGCTTGA
AAGAAACCGTGATCGAATCACTTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

87.5

97.391

0.852
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383
  comEA Acinetobacter baumannii strain A118

32.061

100

0.365

Multiple sequence alignment