Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HYN46_RS02345 Genome accession   NZ_CP031222
Coordinates   520416..521903 (-) Length   495 a.a.
NCBI ID   WP_114897929.1    Uniprot ID   A0A345P3G0
Organism   Aquirhabdus parva strain HYN0046     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515416..526903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS02325 (HYN46_02325) hflX 515835..517295 (-) 1461 WP_114897925.1 ribosome rescue GTPase HflX -
  HYN46_RS02330 (HYN46_02330) - 517673..518428 (+) 756 WP_114897926.1 GNAT family N-acetyltransferase -
  HYN46_RS02335 (HYN46_02335) - 518692..519507 (+) 816 WP_162818064.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  HYN46_RS02340 (HYN46_02340) - 519568..520287 (-) 720 WP_114897928.1 alpha/beta fold hydrolase -
  HYN46_RS02345 (HYN46_02345) comM 520416..521903 (-) 1488 WP_114897929.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HYN46_RS02350 (HYN46_02350) - 521946..522209 (-) 264 WP_114897930.1 accessory factor UbiK family protein -
  HYN46_RS02355 (HYN46_02355) glnK 522718..523056 (+) 339 WP_114897931.1 P-II family nitrogen regulator -
  HYN46_RS02360 (HYN46_02360) - 523196..524623 (+) 1428 WP_114897932.1 ammonium transporter -
  HYN46_RS02365 (HYN46_02365) nrdR 524833..525288 (+) 456 WP_114897933.1 transcriptional regulator NrdR -
  HYN46_RS02370 (HYN46_02370) ribD 525303..526394 (+) 1092 WP_265935990.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53469.31 Da        Isoelectric Point: 9.2017

>NTDB_id=304155 HYN46_RS02345 WP_114897929.1 520416..521903(-) (comM) [Aquirhabdus parva strain HYN0046]
MSFAQVWSRAVMGLNAPTVQVETHLSQGLPALTIVGLPEAAVRESKDRVRSAILNSGFQFPQRRLTINLAPADLPKEGSR
LDLPIALGVLAATGQLSVDALNNREFIGELALNGDLRTVNGVLAVARATHLARRELFLPHANAIEAARIDGLTVWGAPNL
AALCAHLEGTTLLAATPKPKPQVSNAPLLDLADIKGQHRARRALEIAAAGGHSILFSGPPGTGKTLLASRLPSILPPLTD
EESLEVANIYSIASSQHPFGLRPFRAVHHTTSAVALVGGGSQPRPGEITLAHHGVLFLDELPEFDRKVLEVLRQPIESNE
VVISRAARQVTFPAKFQLVAAMNPCPCGYASDTTTRCTCTTDMISRYRAKLSGPLLDRIDLHIEVPAIPASDLQQTQAGE
NSETVRKRVFAARDRQLSRQQGTNQSLTPTQLDKFVPLGEPEQKLMQMAQTRLALSARAYHRVLRVARTIADLANSVDVR
SPHLTEALGYRGFEQ

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=304155 HYN46_RS02345 WP_114897929.1 520416..521903(-) (comM) [Aquirhabdus parva strain HYN0046]
ATGTCATTTGCGCAAGTATGGAGTAGAGCGGTTATGGGGCTGAATGCTCCGACCGTCCAAGTGGAAACTCACTTAAGCCA
AGGGCTGCCTGCCCTAACGATTGTCGGATTACCTGAAGCAGCAGTCCGTGAAAGCAAGGACCGCGTACGTTCTGCAATTT
TAAATTCAGGATTTCAATTCCCCCAGCGGCGTTTGACCATCAACCTTGCACCTGCAGATTTGCCCAAAGAAGGTAGTCGG
TTGGATTTACCCATCGCACTCGGGGTACTGGCAGCGACGGGGCAGCTTTCCGTTGATGCTCTCAATAACCGTGAATTCAT
TGGTGAATTGGCGCTAAATGGTGATTTACGGACGGTTAATGGTGTTCTTGCGGTAGCGCGCGCCACTCATCTTGCACGGC
GTGAACTTTTTTTACCCCATGCGAATGCCATCGAAGCAGCGAGAATTGACGGCTTAACCGTTTGGGGCGCGCCCAATTTA
GCAGCATTGTGTGCACATTTAGAAGGGACCACCTTGCTTGCCGCCACCCCAAAACCTAAACCCCAAGTCTCAAATGCACC
ATTATTGGACCTGGCAGATATAAAAGGGCAACACCGAGCACGACGTGCTTTAGAAATCGCTGCGGCTGGGGGGCACTCCA
TTTTATTCTCAGGGCCTCCAGGAACGGGCAAAACATTACTTGCATCAAGGTTACCGAGTATCTTGCCGCCACTCACCGAT
GAAGAGAGTTTAGAAGTCGCCAATATTTATTCAATAGCCAGTTCGCAACACCCTTTTGGGCTGCGTCCCTTTAGAGCCGT
TCACCACACCACCTCTGCAGTGGCACTTGTTGGAGGTGGATCTCAACCAAGACCCGGTGAGATTACGTTAGCGCATCATG
GTGTCCTGTTTCTTGACGAACTCCCTGAATTCGATCGTAAGGTGCTTGAGGTCTTGCGCCAACCGATAGAGTCCAATGAA
GTCGTGATTTCACGTGCCGCACGTCAAGTCACCTTTCCTGCCAAATTCCAATTGGTTGCTGCGATGAATCCCTGTCCTTG
TGGCTATGCCAGCGATACAACCACGCGTTGTACTTGTACAACGGACATGATTAGCCGTTATCGCGCCAAATTGTCGGGTC
CACTCTTGGATCGTATCGACTTGCACATTGAGGTCCCTGCTATACCTGCCAGTGACTTACAACAAACACAAGCCGGAGAA
AACTCCGAAACGGTCCGCAAGCGGGTCTTTGCTGCACGGGATCGCCAGCTCAGTCGTCAGCAAGGTACCAATCAATCCCT
GACACCCACTCAACTGGATAAATTCGTCCCCTTAGGTGAGCCCGAGCAAAAGCTGATGCAAATGGCTCAAACGCGCCTAG
CTTTATCTGCACGGGCCTACCACCGAGTTTTGCGCGTTGCACGCACCATCGCAGACCTTGCTAATAGTGTGGATGTCCGT
TCGCCACATCTCACAGAAGCACTCGGTTATCGTGGGTTCGAACAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345P3G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.505

100

0.529
  comM Vibrio cholerae strain A1552

51.793

100

0.525
  comM Legionella pneumophila strain ERS1305867

51.107

100

0.513
  comM Legionella pneumophila str. Paris

51.107

100

0.513
  comM Glaesserella parasuis strain SC1401

50.298

100

0.511
  comM Haemophilus influenzae Rd KW20

50.299

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.365

100

0.465

Multiple sequence alignment