Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HSM_RS08995 Genome accession   NC_010519
Coordinates   1986316..1986768 (-) Length   150 a.a.
NCBI ID   WP_012340854.1    Uniprot ID   W0R5B1
Organism   Histophilus somni 2336     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1981316..1991768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS08960 (HSM_1738) - 1981742..1982113 (-) 372 WP_012340847.1 DUF1304 domain-containing protein -
  HSM_RS08965 (HSM_1739) - 1982332..1983432 (-) 1101 WP_012340848.1 MBL fold metallo-hydrolase -
  HSM_RS08970 (HSM_1740) - 1983604..1984218 (-) 615 WP_012340850.1 cation diffusion facilitator family transporter -
  HSM_RS08975 (HSM_1741) - 1984290..1984688 (+) 399 WP_012340851.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  HSM_RS11205 - 1984703..1985062 (+) 360 Protein_1788 arsenic resistance protein -
  HSM_RS08985 (HSM_1744) - 1985115..1985741 (-) 627 Protein_1789 zinc-dependent alcohol dehydrogenase family protein -
  HSM_RS08995 (HSM_1745) ssb 1986316..1986768 (-) 453 WP_012340854.1 single-stranded DNA-binding protein Machinery gene
  HSM_RS09000 (HSM_1746) - 1987102..1987587 (-) 486 WP_012340855.1 DUF3158 family protein -
  HSM_RS09005 (HSM_1747) - 1987596..1988354 (-) 759 WP_012340856.1 PFL_4669 family integrating conjugative element protein -
  HSM_RS09010 (HSM_1748) - 1988533..1989723 (-) 1191 WP_012340857.1 STY4528 family pathogenicity island replication protein -
  HSM_RS09015 (HSM_1749) - 1989882..1990439 (-) 558 WP_012340858.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17204.13 Da        Isoelectric Point: 5.2733

>NTDB_id=30407 HSM_RS08995 WP_012340854.1 1986316..1986768(-) (ssb) [Histophilus somni 2336]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=30407 HSM_RS08995 WP_012340854.1 1986316..1986768(-) (ssb) [Histophilus somni 2336]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0R5B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.333

100

0.76
  ssb Vibrio cholerae strain A1552

51.724

100

0.6
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.527
  ssb Neisseria meningitidis MC58

45.087

100

0.52
  ssbA Bacillus subtilis subsp. subtilis str. 168

31.818

100

0.373

Multiple sequence alignment