Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HSM_RS01025 Genome accession   NC_010519
Coordinates   210983..212512 (-) Length   509 a.a.
NCBI ID   WP_011608485.1    Uniprot ID   -
Organism   Histophilus somni 2336     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 205983..217512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS00990 (HSM_0196) - 206021..206863 (-) 843 WP_011608479.1 metal ABC transporter permease -
  HSM_RS00995 (HSM_0197) - 206856..207746 (-) 891 WP_011608480.1 metal ABC transporter permease -
  HSM_RS01000 (HSM_0198) - 207751..208509 (-) 759 WP_012341036.1 metal ABC transporter ATP-binding protein -
  HSM_RS01005 (HSM_0199) - 208519..209400 (-) 882 WP_012341045.1 metal ABC transporter substrate-binding protein -
  HSM_RS01010 (HSM_0200) - 209506..209835 (-) 330 WP_011608483.1 TusE/DsrC/DsvC family sulfur relay protein -
  HSM_RS01015 (HSM_0201) - 209913..210575 (-) 663 WP_012341065.1 Bax inhibitor-1/YccA family protein -
  HSM_RS01025 (HSM_0202) comM 210983..212512 (-) 1530 WP_011608485.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HSM_RS01030 (HSM_0203) yihA 212614..213228 (-) 615 WP_143432535.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  HSM_RS01035 (HSM_0204) glmU 213230..214591 (-) 1362 WP_041604967.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  HSM_RS01040 (HSM_0205) - 214694..215815 (+) 1122 WP_041605195.1 anhydro-N-acetylmuramic acid kinase -
  HSM_RS01045 (HSM_0206) murQ 215818..216729 (+) 912 WP_012341077.1 N-acetylmuramic acid 6-phosphate etherase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55805.99 Da        Isoelectric Point: 9.4368

>NTDB_id=30392 HSM_RS01025 WP_011608485.1 210983..212512(-) (comM) [Histophilus somni 2336]
MSLAVVYSRASMGVQAPLVTIEVHLSNGKPAFTLVGLPEKTVTEAQGRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQINAKKLQQFEFVAELALTGELRGVHGVIPAILAGQKSKRQLIVAQQNANEASLVSQHETFFARNL
LEVVQFLNDDSSLPSSTTLCMQSAVDFSPQSNKDLTDIIGQQHAKRALMIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
DMTDQEAIETASVTSLVQNELNFQNWKQRPFRAPHHSASSPALVGGGTIPKPGEISLAHNGVLFLDELPEFERRVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGIHNRTSPQQVLRYLNRLSGPFLDRFDLSIEVPLLPQGALQN
TEDRGETTAQVKEKVLRVREIQLARAGKVNAYLTGKEIERDCKLTEQDALFLENTLTRLGLSVRAYHRILKVARTIADLN
GDSDIKQNHLAEALSYRAMDRLLRKLSDQ

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=30392 HSM_RS01025 WP_011608485.1 210983..212512(-) (comM) [Histophilus somni 2336]
ATGTCATTAGCAGTTGTTTATAGTCGAGCATCAATGGGCGTACAAGCACCTTTGGTGACAATTGAAGTTCACTTGAGTAA
TGGAAAACCTGCTTTTACCCTCGTTGGATTACCGGAGAAAACAGTAACTGAGGCTCAAGGACGAGTACGTAGTGCATTAC
TCAATGCTCAATTTAAATACCCAGCAAAACGCATTACAGTTAATCTTGCTCCGGCAGATTTGCCAAAAGAGGGAGGGCGT
TTTGATTTACCTATTGCACTCGGCATCTTAGCGGCCTCGGAACAGATTAATGCAAAAAAGTTACAACAATTTGAATTTGT
TGCAGAGTTGGCTCTCACAGGTGAGTTAAGAGGCGTACACGGTGTGATCCCTGCTATTTTAGCGGGGCAAAAATCTAAGC
GTCAACTTATTGTCGCACAACAAAATGCTAATGAAGCCTCTTTAGTTTCACAACACGAAACATTTTTTGCACGGAACTTA
TTGGAGGTCGTACAATTCCTGAATGACGACAGTTCGCTACCTTCATCCACAACGTTATGTATGCAAAGTGCGGTGGATTT
TTCACCTCAATCTAATAAAGATCTGACGGATATTATTGGTCAACAACATGCTAAACGAGCCTTAATGATTGCAGCTGCCG
GACAACATAATTTGTTGTTTCTCGGACCGCCCGGCACAGGTAAAACCATGTTAGCAAGCCGTCTAACTGGCTTGCTACCG
GATATGACAGATCAAGAGGCAATAGAAACCGCCTCTGTAACAAGTTTGGTACAAAACGAATTAAATTTTCAAAATTGGAA
ACAACGTCCTTTCCGTGCACCTCATCATAGTGCCTCATCACCAGCATTGGTTGGAGGAGGAACAATTCCGAAACCGGGAG
AAATTTCTTTGGCTCATAACGGTGTATTATTTTTAGACGAATTACCCGAATTTGAACGGAGAGTGCTGGATGCTTTACGC
CAGCCTTTAGAAAGCGGAGAAATAATTATTTCACGTGCGAATGCAAAAATTCAGTTTCCGGCACGTTTTCAATTAGTGGC
AGCGATGAATCCAAGTCCAACGGGACATTATACCGGTATACACAACCGCACTTCACCACAACAAGTGTTGCGTTATTTGA
ACAGACTTTCCGGTCCTTTTTTAGATCGCTTTGATCTTTCCATTGAAGTGCCTTTACTTCCACAAGGTGCTTTGCAAAAT
ACCGAAGATCGAGGTGAAACAACAGCACAAGTTAAAGAAAAAGTATTAAGGGTCAGAGAAATTCAGCTAGCTAGAGCCGG
AAAAGTCAATGCTTATTTAACCGGTAAAGAAATTGAGCGAGATTGCAAGTTGACTGAGCAAGATGCACTATTTTTAGAAA
ATACTTTAACCAGACTCGGTTTATCTGTTCGTGCTTATCATCGAATTTTAAAAGTTGCACGCACTATCGCCGATTTAAAC
GGAGATTCTGATATCAAACAAAACCACTTAGCTGAAGCATTAAGCTATCGAGCCATGGATCGTTTGCTACGGAAACTATC
AGACCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.252

99.804

0.841
  comM Glaesserella parasuis strain SC1401

76.134

99.607

0.758
  comM Vibrio cholerae strain A1552

65.422

100

0.654
  comM Vibrio campbellii strain DS40M4

64.217

100

0.652
  comM Legionella pneumophila str. Paris

51.089

99.214

0.507
  comM Legionella pneumophila strain ERS1305867

51.089

99.214

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.631

100

0.462

Multiple sequence alignment