Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ETT44_RS05290 Genome accession   NZ_CP035455
Coordinates   994352..995032 (-) Length   226 a.a.
NCBI ID   WP_136021811.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 989352..1000032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT44_RS05260 (ETT44_05260) - 989590..990168 (+) 579 WP_002989824.1 CYTH domain-containing protein -
  ETT44_RS05265 (ETT44_05265) - 990308..991288 (+) 981 WP_002989827.1 ribose-phosphate diphosphokinase -
  ETT44_RS05270 (ETT44_05270) - 991285..992412 (+) 1128 WP_002989829.1 cysteine desulfurase family protein -
  ETT44_RS05275 (ETT44_05275) - 992402..992749 (+) 348 WP_002989831.1 DUF1831 domain-containing protein -
  ETT44_RS05280 (ETT44_05280) - 993001..993645 (+) 645 WP_002984705.1 redox-sensing transcriptional repressor Rex -
  ETT44_RS05285 (ETT44_05285) - 993655..994350 (+) 696 WP_002989835.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  ETT44_RS05290 (ETT44_05290) radC 994352..995032 (-) 681 WP_136021811.1 DNA repair protein RadC Machinery gene
  ETT44_RS05295 (ETT44_05295) - 995081..996208 (-) 1128 WP_002994399.1 AI-2E family transporter -
  ETT44_RS05300 (ETT44_05300) - 996388..997002 (-) 615 WP_011054476.1 SGNH/GDSL hydrolase family protein -
  ETT44_RS05305 (ETT44_05305) - 997165..998697 (-) 1533 WP_136021810.1 ClC family H(+)/Cl(-) exchange transporter -
  ETT44_RS05310 (ETT44_05310) aphA 998875..999606 (-) 732 WP_002984720.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25771.06 Da        Isoelectric Point: 7.7247

>NTDB_id=303573 ETT44_RS05290 WP_136021811.1 994352..995032(-) (radC) [Streptococcus pyogenes strain emm197]
MYSIKCDDNKVMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLKELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=303573 ETT44_RS05290 WP_136021811.1 994352..995032(-) (radC) [Streptococcus pyogenes strain emm197]
ATGTATTCTATAAAATGTGATGATAATAAAGTCATGCCAAGAGAACGTTTGATGCGACTAGGAGCAGAGTCTCTAAGTAA
TCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGCATGTCTTAGAGCTGTCATCCTATCTTTTATCGC
ATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGAAAGAATTACAACATTTGGCAGGTATAGGAAAAGTTAAAGCG
ATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACCGATAAGACATTAACTGATAGCGTATTAACCAG
TGTTCAGGTCGCTGAAAAAATGATGGCAGCTTTAGGAGATAAAAAACAAGAGCATTTAGTCGTATTGTATTTAGATAATC
AAAATCGTATTATTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTTCACTTGCAGAACCAAGAGAAATTTTATAC
TATGCCTGTAAAAATATGGCGACTAGTCTCATTGTTATTCATAATCATCCTTCAGGAAATATTGAACCTAGTTCTAACGA
TTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTATCTGTCTAGATCACATTATCGTTAGCTATA
AAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(107-222)

UPF0758 N-terminal (UPF0758_N)

(12-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

57.522

100

0.575
  radC Streptococcus pneumoniae R6

57.08

100

0.571
  radC Streptococcus pneumoniae D39

57.08

100

0.571
  radC Streptococcus gordonii str. Challis substr. CH1

55.752

100

0.558
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.256

95.133

0.412
  radC Haemophilus influenzae Rd KW20

38.356

96.903

0.372