Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DTO96_RS02340 Genome accession   NZ_CP031124
Coordinates   482222..483745 (+) Length   507 a.a.
NCBI ID   WP_114563885.1    Uniprot ID   -
Organism   Ephemeroptericola cinctiostellae strain F02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 477222..488745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTO96_RS02310 (DTO96_100464) - 477636..478385 (-) 750 WP_114562023.1 thiol:disulfide interchange protein DsbA/DsbL -
  DTO96_RS02315 (DTO96_100465) - 478461..479099 (-) 639 WP_114562024.1 thiol:disulfide interchange protein DsbA/DsbL -
  DTO96_RS02320 (DTO96_100466) - 479151..479864 (-) 714 WP_114562025.1 hypothetical protein -
  DTO96_RS02325 (DTO96_100467) argS 479963..481624 (-) 1662 WP_114562026.1 arginine--tRNA ligase -
  DTO96_RS02335 (DTO96_100468) - 481861..482154 (+) 294 WP_114562028.1 hypothetical protein -
  DTO96_RS02340 (DTO96_100469) comM 482222..483745 (+) 1524 WP_114563885.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DTO96_RS02345 (DTO96_100470) - 483935..484267 (+) 333 WP_114562029.1 ATP synthase subunit I -
  DTO96_RS02350 (DTO96_100471) atpB 484299..485156 (+) 858 WP_114562030.1 F0F1 ATP synthase subunit A -
  DTO96_RS02355 (DTO96_100472) atpE 485225..485461 (+) 237 WP_114562031.1 F0F1 ATP synthase subunit C -
  DTO96_RS02360 (DTO96_100473) - 485557..486027 (+) 471 WP_114562032.1 F0F1 ATP synthase subunit B -
  DTO96_RS02365 (DTO96_100474) - 486059..486592 (+) 534 WP_114562033.1 F0F1 ATP synthase subunit delta -
  DTO96_RS02370 (DTO96_100475) atpA 486645..488186 (+) 1542 WP_114562034.1 F0F1 ATP synthase subunit alpha -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54254.83 Da        Isoelectric Point: 8.1239

>NTDB_id=303489 DTO96_RS02340 WP_114563885.1 482222..483745(+) (comM) [Ephemeroptericola cinctiostellae strain F02]
MSLAVLKSRALIGMAAPRVTVEVHLANGLPSFNIVGLPEAEVRESKDRVRAAILNSNLEFPSKRITVNLAPADLPKASGR
FDLPIALGILIASGQLKVKDLHGYEFAGELSLSGELRPVQGALAMVYGLTQEALLLGESPPIVVLPEVNCAEAALVSEAR
VWSATSLLGVCGKLRAPELQAEHDATMFGSEQALMAAVDWSDVRGQATVKRALEVAAAGGHSVLMVGPPGTGKSMLAARL
PSILPPMTELQAMESASVASSAGQFDVRLWKKRPYRSPHHTASAVALVGGGAVPRPGEISLAHNGILFLDELPEFDKKVL
EVLREPLESGEIHISRAARQATFPARFQLIAAMNPCPCGYFGHSTRACRCAPDQVLRYQSRLSGPFLNRIDMQVEVPAVP
VEALDSVGREEVGAVVAKRVLRAFERQIERQGCVNAHLSVKAVELVCGLDGAATALLGRAMTQLNWSARIYHRILRVART
IADMEAADQIGTAHVAQAIQYRRAMSS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=303489 DTO96_RS02340 WP_114563885.1 482222..483745(+) (comM) [Ephemeroptericola cinctiostellae strain F02]
ATGAGCCTAGCGGTTTTGAAATCTCGCGCTTTGATTGGCATGGCTGCGCCACGGGTGACCGTTGAGGTGCATTTGGCCAA
TGGTTTGCCGTCTTTCAATATTGTTGGCCTTCCTGAGGCGGAAGTGCGGGAGTCGAAGGATCGTGTGCGTGCCGCCATTC
TCAATAGTAACCTTGAATTTCCAAGCAAGCGCATCACTGTTAATCTTGCACCGGCCGATCTGCCGAAAGCCTCAGGTCGT
TTTGATCTGCCAATTGCCTTGGGTATTTTAATTGCCAGTGGCCAGTTGAAAGTTAAAGATTTGCACGGTTATGAATTTGC
TGGAGAATTGTCTCTTTCTGGTGAGTTGCGTCCCGTGCAGGGTGCTTTGGCGATGGTGTATGGTTTGACGCAGGAAGCCC
TGCTGTTGGGGGAGTCGCCGCCAATTGTGGTGTTGCCTGAGGTCAATTGTGCGGAAGCAGCGCTGGTGTCGGAAGCCCGG
GTGTGGTCGGCAACTTCTTTGCTTGGGGTGTGTGGAAAGCTGCGCGCTCCTGAGTTACAGGCAGAACATGATGCAACAAT
GTTTGGGAGTGAGCAAGCCCTGATGGCGGCCGTGGATTGGTCGGATGTTCGTGGTCAGGCGACCGTCAAGCGTGCGCTTG
AAGTGGCGGCTGCGGGTGGTCACAGCGTGCTGATGGTTGGGCCGCCAGGCACTGGTAAGTCAATGTTGGCGGCCCGCTTG
CCAAGCATTTTGCCGCCGATGACGGAGCTACAGGCGATGGAGAGTGCGTCGGTGGCTTCCAGTGCTGGGCAGTTTGATGT
TCGGTTGTGGAAGAAGCGCCCTTACCGCTCCCCGCACCATACGGCTTCAGCTGTGGCGCTGGTTGGCGGGGGAGCGGTTC
CTCGTCCAGGTGAGATCTCGTTGGCGCATAATGGCATTTTGTTTTTGGATGAATTGCCTGAGTTTGATAAAAAAGTGTTG
GAGGTGTTGAGGGAGCCTTTGGAGTCGGGTGAAATTCACATTTCGCGAGCGGCTCGACAGGCAACGTTCCCAGCGAGGTT
TCAATTGATCGCTGCAATGAATCCGTGCCCATGTGGCTACTTTGGTCATTCAACGCGTGCTTGTCGTTGTGCGCCAGATC
AAGTGTTGCGCTATCAGTCGCGTTTGTCGGGGCCTTTTTTGAATCGCATAGACATGCAGGTTGAAGTACCTGCTGTACCT
GTGGAGGCTTTGGATTCGGTGGGTCGGGAGGAAGTTGGCGCCGTCGTGGCGAAGCGGGTGTTGCGTGCATTTGAGCGACA
AATTGAACGTCAGGGGTGCGTCAATGCCCACCTGTCGGTCAAGGCGGTCGAGCTTGTGTGTGGTTTGGATGGGGCGGCCA
CTGCGTTACTGGGGCGTGCGATGACTCAATTGAACTGGTCAGCACGAATTTACCATCGAATTTTAAGGGTGGCAAGAACA
ATTGCAGACATGGAGGCCGCCGATCAGATTGGCACGGCACATGTTGCTCAAGCCATTCAGTATCGAAGGGCGATGTCATC
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-502)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.452

100

0.535
  comM Vibrio campbellii strain DS40M4

52.663

100

0.527
  comM Haemophilus influenzae Rd KW20

50.196

100

0.505
  comM Legionella pneumophila strain ERS1305867

49.219

100

0.497
  comM Legionella pneumophila str. Paris

49.219

100

0.497
  comM Glaesserella parasuis strain SC1401

49.802

99.803

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.452

99.408

0.432

Multiple sequence alignment