Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DUT84_RS21080 Genome accession   NZ_CP031105
Coordinates   4108346..4108975 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AMSCJX02     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4103346..4113975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUT84_RS21055 (DUT84_21055) ycbZ 4103736..4105496 (-) 1761 WP_000156520.1 Lon protease family protein -
  DUT84_RS21060 (DUT84_21060) matP 4105682..4106134 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  DUT84_RS21065 (DUT84_21065) ompA 4106209..4107261 (-) 1053 WP_000750419.1 porin OmpA -
  DUT84_RS21075 (DUT84_21075) sulA 4107618..4108127 (-) 510 WP_114455218.1 SOS-induced cell division inhibitor SulA -
  DUT84_RS21080 (DUT84_21080) sxy/tfoX 4108346..4108975 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DUT84_RS21085 (DUT84_21085) yccS 4108938..4111100 (-) 2163 WP_000875044.1 YccS family putative transporter -
  DUT84_RS21090 (DUT84_21090) yccF 4111110..4111556 (-) 447 WP_001261231.1 YccF domain-containing protein -
  DUT84_RS21095 (DUT84_21095) helD 4111679..4113733 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=303417 DUT84_RS21080 WP_000839153.1 4108346..4108975(+) (sxy/tfoX) [Escherichia coli strain AMSCJX02]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=303417 DUT84_RS21080 WP_000839153.1 4108346..4108975(+) (sxy/tfoX) [Escherichia coli strain AMSCJX02]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment