Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DUN60_RS14415 Genome accession   NZ_CP031055
Coordinates   3209989..3211512 (+) Length   507 a.a.
NCBI ID   WP_114634147.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3204989..3216512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS14400 - 3206603..3207571 (-) 969 WP_017095708.1 branched-chain amino acid transaminase -
  DUN60_RS14405 ilvM 3207584..3207868 (-) 285 WP_017077311.1 acetolactate synthase 2 small subunit -
  DUN60_RS14410 ilvG 3207870..3209516 (-) 1647 WP_004735752.1 acetolactate synthase 2 catalytic subunit -
  DUN60_RS14415 comM 3209989..3211512 (+) 1524 WP_114634147.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DUN60_RS14420 - 3211640..3212593 (-) 954 WP_114634148.1 DUF2860 domain-containing protein -
  DUN60_RS14425 - 3212733..3213332 (-) 600 WP_054548312.1 thiol:disulfide interchange protein DsbA/DsbL -
  DUN60_RS14430 - 3213388..3214374 (-) 987 WP_114634149.1 serine/threonine protein kinase -
  DUN60_RS14435 ccoG 3214449..3215867 (-) 1419 WP_114634150.1 cytochrome c oxidase accessory protein CcoG -
  DUN60_RS14440 - 3216194..3216457 (-) 264 WP_004735759.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55583.69 Da        Isoelectric Point: 7.6368

>NTDB_id=302983 DUN60_RS14415 WP_114634147.1 3209989..3211512(+) (comM) [Vibrio splendidus strain Vibrio sp]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPQHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=302983 DUN60_RS14415 WP_114634147.1 3209989..3211512(+) (comM) [Vibrio splendidus strain Vibrio sp]
ATGGGACTCGCGATAATTCATAGCCGAGCTAGTGTGGGAGTAGAGGCACCAGAAGTGACGGTTGAAGTGCATATAAGCAA
CGGTATGCCTGGGTTTACATTGGTGGGGCTACCTGAAACGACGGTCAAGGAATCTAAAGATCGAGTCAGGAGTGCCATCA
TCAATTCTCGCTTTGAATTTCCATCGAAAAGGATCACGGTCAACCTCGCACCTGCTGATTTACCCAAGGAGGGAGGACGT
TTCGATCTGCCAATCGCGCTTGGGATTTTGGTGGCGTCAGATCAACTTCCGACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAATTGCGCTCGGTAAAGGGCGTTCTGCCTGCGACGTTAGCCGCCGATAGTGTCGAAC
GATGCTTAGTGGTTCCACAGCACAATGGTGATCAGGCGGCCTTAGTCGGCAAAGGGGCCCATAAATCAGCGCAAACCTTG
CTAGAGGTTTGTGCAGATATGTGTGGCCAGGCTCAGCTTGGTCTATATCGAACCGAGCATCATCATGTCGATGTGTCTGA
TAATCGTGACTTACAAGATATTATTGGCCAGCAGCAAGGTAAGCGAGCACTGGAGATCGCCGCAGCGGGCAACCATAACC
TACTTTTTCTCGGCCCGCCTGGAACTGGGAAAACCATGTTGGCTTCTCGATTGCGCGATTTGTTGCCTGAAATGAGTGAC
GACGAGGCGATGGAAACCGCTTCGGTAGCCTCTTTAACGCAACAAGAGATCAATCAATACAACTGGAAACAACGACCTTT
CCGTTCCCCACACCATTCGAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGTGAGATATCTTTGG
CGCATAATGGCTTATTGTTTCTTGATGAGATGCCAGAGTTTGAGCGTAAGGTACTTGATTCACTGCGAGAGCCGCTAGAG
TCGGGTGAAATCATTATCTCCCGTGTCGCGGGTAAGACGCGTTTTCCGGCGCGCTTTCAATTGGTGGGTGCGCTTAACCC
AAGCCCAACAGGATATTACGAGGGCAATCAAGCTCGAGCGAACCCGCAAATTATCCTGCGTTACCTCAACCGCTTATCTG
GGCCATTGTTGGATAGATTCGATATGTCATTGGAGATCCCTCTATTGCCCAAAGGGATGTTAGCCGAAGGAGGCGATCGT
GGAGAAACCACTCAAGTCGTGAAGCAACGAGTTAAACAAGCGCGTCAGTTGATGTTATCTCGAAACCATAAGTCGAACGC
ACTGTTAGGTAGTCGAGAAATTGAAAAGTATTGCCCATTGCGACGTGAAGATGCGGAGTTTCTCGAGACCGCACTACATC
GATTGGGTTTATCGATCCGTGCCTATCATCGCATTATTAAGGTAGCGCGAACCATTGCAGACCTTGACGGTAATGAGCAG
ATTGAAAAGAAGCACTTATCAGAGGCACTTGGCTACCGAGCGATGGATCGACTGTTGAAACAACTCACGGCTCAAGCGGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Vibrio campbellii strain DS40M4

83.037

100

0.83
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

63.281

100

0.639
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.292

99.803

0.422

Multiple sequence alignment