Detailed information NTG0302965

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DUN60_RS11600
• Genome accession: NZ_CP031055
• Coordinates: 2660898..2661767 (+)
• Length: 289 a.a.
• NCBI ID: WP_114634000.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain Vibrio sp
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2655898..2666767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DUN60_RS11580	nadC	2656282..2657172 (+)	891	WP_114633999.1	carboxylating nicotinate-nucleotide diphosphorylase	-
DUN60_RS11585	pilA	2657428..2657901 (+)	474	WP_054547487.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
DUN60_RS11590	pilB	2657901..2659586 (+)	1686	WP_054547486.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DUN60_RS11595	pilC	2659601..2660830 (+)	1230	WP_054547485.1	type II secretion system F family protein	Machinery gene
DUN60_RS11600	pilD	2660898..2661767 (+)	870	WP_114634000.1	A24 family peptidase	Machinery gene
DUN60_RS11605	coaE	2661770..2662384 (+)	615	WP_054547484.1	dephospho-CoA kinase	-
DUN60_RS11610	zapD	2662411..2663151 (+)	741	WP_017087400.1	cell division protein ZapD	-
DUN60_RS11615	yacG	2663233..2663430 (+)	198	WP_004735515.1	DNA gyrase inhibitor YacG	-
DUN60_RS11620	rplS	2663757..2664110 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
DUN60_RS11625	trmD	2664170..2664910 (-)	741	WP_004735512.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
DUN60_RS11630	rimM	2664937..2665491 (-)	555	WP_004735510.1	ribosome maturation factor RimM	-
DUN60_RS11635	rpsP	2665516..2665764 (-)	249	WP_004735508.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32584.84 Da
• Isoelectric Point: 7.9546

>NTDB_id=302965 DUN60_RS11600 WP_114634000.1 2660898..2661767(+) (pilD) [Vibrio splendidus strain Vibrio sp]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRII
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQNSVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=302965 DUN60_RS11600 WP_114634000.1 2660898..2661767(+) (pilD) [Vibrio splendidus strain Vibrio sp]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
CGTAGTCATACACCGTTTACCGATAATGATGGAACGAGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTCAATCTCAGTATCCCTCGTTCTACCTGCCCGAAATGTAAAACCCAATTAAGAATCATC
GACAATATTCCAGTATTAAGTTGGTTGTTCTTAAAGGGCAAGTGCCATAGCTGTGCTAACCCAATCAGCGCTCGTTATCC
ATTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCGAGCCACTTTGGTTTCAGTTACTACGCCATCGCTCTGA
TTTTTTTCACGTTTGCCTTGATTACCGCAACCTTTATCGATCTCGATACTATGCTGTTGCCTGATCAAATTACCTTGCCT
TTAGTGTGGTCTGGTATCGCGTTAGCTCTGTTTAATATCAGCCCTGTATCGCTTCAAAATTCAGTGATTGGCGCAATGGC
AGGCTACCTAGCACTTTGGTCGGTTTATTGGCTGTTCAAGCTGTTAACAGGCAAAGAAGGCATGGGTTACGGCGACTTCA
AACTTCTGGCTGCACTTGGCGCGTGGCTTGGCTGGCAGCACCTACCAATGATCATTCTTTTGTCGTCGCTGGTCGGTTTA
GTTTTCGGATTGATTCAACTTCGCTTGAAACAACAAGGCATAGATAAAGCCTTTCCATTTGGACCTTACCTTGCAATTGC
GGGTTGGGTGAGTTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.394	100	0.744
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436