Detailed information NTG0302857

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DT070_RS02735
• Genome accession: NZ_CP031013
• Coordinates: 572899..574353 (+)
• Length: 484 a.a.
• NCBI ID: WP_122954023.1
• Uniprot ID: -
• Organism: Polaromonas sp. SP1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 567899..579353

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DT070_RS02715 (DT070_02715)	ffh	568677..570035 (-)	1359	WP_122954019.1	signal recognition particle protein	-
DT070_RS02720 (DT070_02720)	-	570136..570936 (+)	801	WP_122954020.1	inner membrane protein YpjD	-
DT070_RS02725 (DT070_02725)	-	570933..571184 (+)	252	WP_122954021.1	PP0621 family protein	-
DT070_RS02730 (DT070_02730)	-	571181..572899 (+)	1719	WP_122954022.1	ATP-binding protein	-
DT070_RS02735 (DT070_02735)	pilR	572899..574353 (+)	1455	WP_122954023.1	sigma-54 dependent transcriptional regulator	Regulator
DT070_RS02740 (DT070_02740)	ampD	574340..574942 (+)	603	WP_122954024.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
DT070_RS02745 (DT070_02745)	-	575390..578299 (+)	2910	WP_122954025.1	ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 484 a.a.
• Molecular weight: 52388.62 Da
• Isoelectric Point: 5.2713

>NTDB_id=302857 DT070_RS02735 WP_122954023.1 572899..574353(+) (pilR) [Polaromonas sp. SP1]
MSTQAPAAQQARILVIDDEPDLRTLYELTLLREGYRVEAAGDLQQARQQLSENRFDAVITDMRLPDGLGLELLRDLVTQQ
RPERCVVITAHGSAENAVEALKAGAFDYLTKPVDLKQFRSVVASAVQGARQPAAAAKAERNGAEPGIAPLAIPLPVAADA
PLILQKLVGESAVMRAVKSRIVKVAGSMAPVLIQGESGTGKELVARAVHGCSHRAAGPFVAVNCSAIPENLLEAEFFGAR
KGAYTGSAQDRQGYFQAAKGGTLFLDEIGDLPLAMQSKLLRAIQERTVRPLGSPHEDAVDVRIVSATHKDLSAGVEQGTF
RQDLYYRLNVIEILVPALRERREDLPALCKALLSRICQESGFGMPELTDAVMEQLRARPFNGNVRELENTLHRAVALGDG
SELHFDAPAEEHVSVPENLQDYLDGQERNILTKVLLETGFNRTAAASRLGLTLRQIRYRIARLNIVTPGSDDPADGLDPA
DDPA

Nucleotide

• Length: 1455 bp

>NTDB_id=302857 DT070_RS02735 WP_122954023.1 572899..574353(+) (pilR) [Polaromonas sp. SP1]
ATGAGCACGCAAGCCCCCGCCGCCCAGCAAGCCCGCATCCTCGTCATTGACGACGAGCCGGACCTGCGCACCCTCTACGA
GCTGACGCTGCTCAGGGAAGGCTATCGGGTGGAAGCTGCCGGCGACCTGCAGCAGGCCCGCCAGCAACTGAGTGAAAACC
GCTTCGACGCGGTCATCACCGACATGCGCCTGCCGGACGGCCTGGGCCTCGAATTGCTGCGCGACCTGGTGACCCAGCAG
CGGCCGGAGCGCTGCGTGGTCATCACGGCGCACGGTTCTGCCGAAAATGCGGTCGAAGCGCTGAAGGCCGGCGCTTTTGA
CTACCTCACCAAGCCGGTCGACCTCAAACAGTTTCGCAGCGTCGTCGCCTCGGCCGTGCAGGGCGCGCGGCAGCCCGCTG
CTGCCGCCAAGGCCGAACGCAATGGCGCGGAACCGGGTATCGCCCCCCTCGCGATCCCGCTGCCCGTAGCCGCCGATGCG
CCTTTGATACTGCAAAAACTGGTCGGTGAATCGGCCGTCATGCGCGCCGTGAAATCGCGCATCGTCAAGGTGGCGGGCAG
CATGGCGCCGGTTTTGATCCAGGGAGAATCGGGCACCGGCAAGGAACTGGTCGCGCGAGCGGTGCACGGCTGCAGCCACC
GGGCGGCAGGCCCTTTTGTGGCAGTCAACTGCAGCGCCATCCCCGAGAACCTTCTCGAAGCGGAGTTCTTCGGCGCGCGC
AAAGGGGCGTACACCGGATCGGCACAGGACCGGCAGGGCTACTTCCAGGCGGCCAAAGGCGGCACCCTGTTTCTCGATGA
GATCGGCGACCTGCCGCTGGCCATGCAATCCAAGCTGTTGCGGGCCATCCAGGAGCGAACGGTGCGCCCGCTGGGCTCCC
CGCACGAAGATGCCGTCGATGTGCGCATCGTCAGCGCCACCCACAAGGACCTGTCCGCCGGCGTAGAGCAAGGCACCTTC
CGCCAGGACCTGTATTACCGGCTCAACGTGATCGAGATTCTTGTGCCCGCCCTGCGCGAGCGCCGGGAAGACCTGCCCGC
TCTGTGCAAGGCACTGCTTTCAAGAATCTGCCAGGAGTCCGGCTTCGGCATGCCCGAGCTGACGGACGCCGTGATGGAAC
AACTGCGCGCGCGGCCCTTCAACGGCAATGTGCGGGAGCTTGAAAACACCCTGCACCGGGCGGTGGCGCTCGGCGACGGC
AGCGAGCTTCACTTCGATGCGCCGGCGGAAGAGCACGTCTCGGTTCCCGAGAACCTGCAGGATTACCTGGACGGGCAGGA
AAGAAACATTCTTACCAAGGTATTGCTGGAAACCGGCTTTAACCGCACCGCCGCAGCCAGCCGGCTGGGCCTGACGCTTC
GCCAGATCCGCTACCGGATTGCCCGCCTGAACATCGTGACGCCGGGCAGCGACGACCCCGCCGACGGACTCGACCCTGCC
GATGACCCCGCCTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (167-333)

• Response regulator receiver domain (Response_reg) (13-122)

• Bacterial regulatory protein, Fis family (HTH_8) (427-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50	96.281	0.481
pilR	Acinetobacter baumannii strain A118	40.816	100	0.413