Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DT070_RS03790 Genome accession   NZ_CP031013
Coordinates   802378..802872 (-) Length   164 a.a.
NCBI ID   WP_122954213.1    Uniprot ID   A0A5Q3HC20
Organism   Polaromonas sp. SP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 797378..807872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT070_RS03770 (DT070_03770) - 798055..799473 (-) 1419 WP_228778584.1 MipA/OmpV family protein -
  DT070_RS03775 (DT070_03775) - 799705..799980 (+) 276 WP_122954210.1 DUF4242 domain-containing protein -
  DT070_RS03780 (DT070_03780) - 799990..801816 (+) 1827 WP_122954211.1 BTAD domain-containing putative transcriptional regulator -
  DT070_RS03785 (DT070_03785) - 801849..802316 (+) 468 WP_164483710.1 DUF2917 domain-containing protein -
  DT070_RS03790 (DT070_03790) ssb 802378..802872 (-) 495 WP_122954213.1 single-stranded DNA-binding protein Machinery gene
  DT070_RS03795 (DT070_03795) - 802906..804132 (-) 1227 WP_122954214.1 MFS transporter -
  DT070_RS03800 (DT070_03800) uvrA 804322..807402 (+) 3081 WP_369973916.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17733.81 Da        Isoelectric Point: 5.9556

>NTDB_id=302858 DT070_RS03790 WP_122954213.1 802378..802872(-) (ssb) [Polaromonas sp. SP1]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTIATTDKWKDKQSGEMKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKFTTEIRADQMQMLGSRQGMGGPGGDDGGGYEAPRQSAPARAPAAAAPRQAPAASKAASGFDDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=302858 DT070_RS03790 WP_122954213.1 802378..802872(-) (ssb) [Polaromonas sp. SP1]
ATGGCATCCGTCAATAAAGTCATCGTCGTCGGCAATCTCGGCCGCGACCCCGAAATGCGCACTTTCCCGAGCGGCGACCA
GGTCGCCAACGTCACCATTGCCACCACCGACAAATGGAAAGACAAACAAAGCGGCGAAATGAAAGAAGCCACCGAATGGC
ACCGCGTGGTGTTCAACGGTCGCCTGGCCGAGATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTTGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAATTCACCACTGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCCCCGGCGGTGACGACGGCGGCGGCTACGAAGCCCCGCGCCAGTCCGCACCGG
CACGCGCACCTGCCGCAGCCGCACCCCGGCAGGCGCCAGCGGCCTCCAAGGCTGCCAGCGGTTTCGACGACATGGACGAC
GATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q3HC20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.276

100

0.555
  ssb Vibrio cholerae strain A1552

48.603

100

0.53
  ssb Neisseria meningitidis MC58

45.455

100

0.488
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.488

Multiple sequence alignment