Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DT070_RS02580 Genome accession   NZ_CP031013
Coordinates   541048..541446 (-) Length   132 a.a.
NCBI ID   WP_092131852.1    Uniprot ID   A0A5Q3HCQ4
Organism   Polaromonas sp. SP1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 536048..546446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT070_RS02565 (DT070_02565) - 537809..540100 (-) 2292 WP_122953999.1 methyl-accepting chemotaxis protein -
  DT070_RS02570 (DT070_02570) - 540131..540661 (-) 531 WP_122954000.1 chemotaxis protein CheW -
  DT070_RS02575 (DT070_02575) - 540683..541048 (-) 366 WP_007864987.1 response regulator transcription factor -
  DT070_RS02580 (DT070_02580) pilG 541048..541446 (-) 399 WP_092131852.1 PleD family two-component system response regulator Regulator
  DT070_RS02585 (DT070_02585) - 541519..541692 (-) 174 WP_122954001.1 rubredoxin -
  DT070_RS02590 (DT070_02590) - 541775..542743 (+) 969 WP_122954002.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DT070_RS02595 (DT070_02595) hemL 542724..544055 (+) 1332 WP_122954003.1 glutamate-1-semialdehyde 2,1-aminomutase -
  DT070_RS02600 (DT070_02600) purH 544296..545879 (-) 1584 WP_122954004.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  DT070_RS02605 (DT070_02605) - 545969..546205 (-) 237 WP_122954005.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14551.84 Da        Isoelectric Point: 6.9509

>NTDB_id=302856 DT070_RS02580 WP_092131852.1 541048..541446(-) (pilG) [Polaromonas sp. SP1]
MSIPSSGLKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDYEPNLIFCDILMPRLDGYQTCAIIKRNVKFS
AVPIVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQTVQELGSAKQGVV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=302856 DT070_RS02580 WP_092131852.1 541048..541446(-) (pilG) [Polaromonas sp. SP1]
GTGAGCATTCCCAGTTCCGGACTGAAGGTTTTGGTCATCGATGACAGCAATACCATCCGGCGTAGCGCCGAGATATTCCT
GAAGCAGGGTGGCCATGAGGTGTTGTTGGCGGAAGACGGCTTTGACGCCTTGTCCAAAGTTAACGACTACGAACCCAATC
TGATTTTTTGCGACATTCTGATGCCCCGCCTGGATGGCTATCAAACGTGCGCGATTATCAAACGCAATGTGAAGTTTTCC
GCCGTTCCCATTGTGATGCTGTCCTCCAAGGACGGTGTATTCGACAAGGCGCGTGGTCGTATGGTGGGGTCGCAAGACTA
CCTGACCAAGCCTTTTACCAAAGATCAGCTGCTGCAGACCGTTCAGGAACTGGGCAGCGCCAAACAAGGAGTAGTGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q3HCQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

59.483

87.879

0.523

Multiple sequence alignment