Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DS731_RS21180 Genome accession   NZ_CP031010
Coordinates   4871555..4873075 (+) Length   506 a.a.
NCBI ID   WP_119503170.1    Uniprot ID   A0A385N1L8
Organism   Alteromonas sp. RKMC-009     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4866555..4878075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS731_RS21165 (DS731_21280) ilvD 4867602..4869452 (-) 1851 WP_119503167.1 dihydroxy-acid dehydratase -
  DS731_RS21170 (DS731_21285) - 4869488..4870420 (-) 933 WP_119503168.1 branched-chain amino acid transaminase -
  DS731_RS21175 (DS731_21290) - 4870866..4871477 (+) 612 WP_119503169.1 trimeric intracellular cation channel family protein -
  DS731_RS21180 (DS731_21295) comM 4871555..4873075 (+) 1521 WP_119503170.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DS731_RS21185 (DS731_21300) ilvY 4873057..4873920 (-) 864 WP_119503564.1 HTH-type transcriptional activator IlvY -
  DS731_RS21190 (DS731_21305) ilvC 4874076..4875557 (+) 1482 WP_119503171.1 ketol-acid reductoisomerase -
  DS731_RS21195 (DS731_21310) - 4875703..4877667 (-) 1965 WP_119503172.1 S9 family peptidase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54226.98 Da        Isoelectric Point: 6.7849

>NTDB_id=302809 DS731_RS21180 WP_119503170.1 4871555..4873075(+) (comM) [Alteromonas sp. RKMC-009]
MGMAVVKTRAGTGIDAPLVRVEVHLANGLPAFQLVGMAETSVKEARDRVRSALINSGFEFPARRITVNLSPASIPKQGGR
YDLAIAVGILMAHGQLNDSTCDGMEFTGELSLTGELMAVSGIIPAVIACRSAGRTMFHPAANKDEAALVDGAKRFAADSL
ISVFLHLAGLEPLAADENHPVKPVHGSAQPVWEGIHGQHQAKRALMIAAAGAHNLIFTGPPGTGKSLLASRLLRLLPPLS
ADEALDVAALYSVKHTVTRDIIAGCRPFRSPHHTSSAVALTGGGASPAPGEVSLAHHGVLFLDELPEFGRRALDVLREPL
ETGEVHISRASGQATFPARFQLIAAMNPSPTGDADDGRTPPDQILRYLSRISGPLLDRIDIQVEVPRLPDYQLTLTPENH
EPDDIRQPQQKVQQAQAVQYERQGGLNAMLPVSRLADVCALSEEDSRFIQMAAEKLSLSMRAFHRALKVARTIADLEGQD
TVQRNHLSEALGYRALDNLLRQLSGI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=302809 DS731_RS21180 WP_119503170.1 4871555..4873075(+) (comM) [Alteromonas sp. RKMC-009]
ATGGGAATGGCAGTGGTAAAAACCCGCGCCGGTACGGGAATCGATGCCCCGCTGGTAAGGGTGGAAGTGCATCTGGCAAA
CGGATTACCGGCATTTCAACTGGTGGGTATGGCAGAAACTTCAGTGAAGGAGGCCAGAGACAGGGTTCGCAGTGCGCTTA
TAAACAGCGGCTTTGAGTTTCCGGCCAGACGGATCACGGTAAACCTGTCTCCGGCAAGTATTCCCAAGCAGGGCGGCCGT
TACGATCTTGCCATCGCGGTAGGTATTTTAATGGCACATGGTCAGCTTAACGACAGCACCTGTGACGGAATGGAATTTAC
CGGTGAGTTATCGCTAACCGGCGAGCTGATGGCTGTCAGTGGCATTATTCCGGCTGTTATAGCCTGCAGATCCGCAGGCC
GCACAATGTTTCATCCCGCTGCGAACAAAGATGAAGCCGCACTGGTTGATGGTGCAAAGCGCTTTGCTGCAGATTCTTTA
ATTTCCGTTTTTCTGCACCTGGCAGGGCTTGAGCCCCTTGCCGCTGATGAAAACCATCCGGTAAAGCCTGTTCATGGCTC
CGCGCAGCCCGTGTGGGAAGGTATTCATGGCCAGCATCAGGCAAAACGGGCACTTATGATTGCAGCGGCCGGCGCGCATA
ATCTGATTTTCACGGGGCCGCCGGGCACCGGCAAAAGTTTACTTGCCAGCCGGCTGCTCCGCTTACTGCCGCCATTATCA
GCGGATGAGGCTCTGGATGTGGCGGCGTTGTATTCAGTCAAACATACCGTTACCCGTGACATCATTGCCGGTTGCCGTCC
TTTCCGCTCTCCACATCATACCAGCTCAGCCGTTGCGCTTACCGGTGGCGGTGCATCACCGGCTCCCGGGGAAGTGTCAC
TGGCACACCACGGCGTATTATTTTTAGATGAACTGCCGGAGTTCGGCAGGCGGGCGCTGGATGTACTCCGCGAACCCCTT
GAAACCGGTGAAGTGCATATTTCAAGAGCATCCGGGCAGGCCACCTTCCCGGCACGTTTCCAGTTGATAGCCGCAATGAA
CCCCAGTCCTACCGGCGATGCAGATGACGGCCGAACGCCACCGGACCAGATATTGAGATACCTGAGCCGCATATCCGGTC
CGCTGCTTGACCGTATCGACATACAGGTGGAAGTGCCCCGCTTACCGGACTATCAGTTGACTTTGACCCCGGAAAACCAT
GAACCGGATGACATCCGCCAGCCACAACAAAAGGTGCAGCAGGCACAGGCCGTTCAGTATGAACGTCAGGGCGGGTTGAA
TGCCATGTTGCCGGTTAGCAGGCTGGCAGACGTCTGCGCCTTGTCAGAAGAAGATTCGCGGTTTATTCAGATGGCGGCAG
AGAAATTGTCACTCTCTATGCGGGCATTTCATCGTGCTTTGAAGGTGGCCAGAACCATTGCCGATCTTGAAGGGCAGGAT
ACGGTTCAGCGCAATCACCTGTCAGAGGCACTGGGCTACCGTGCGCTGGATAATCTGCTCCGTCAGCTTAGCGGGATCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385N1L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.282

100

0.514
  comM Haemophilus influenzae Rd KW20

50.685

100

0.512
  comM Vibrio campbellii strain DS40M4

50.791

100

0.508
  comM Glaesserella parasuis strain SC1401

50.098

100

0.504
  comM Legionella pneumophila str. Paris

47.8

98.814

0.472
  comM Legionella pneumophila strain ERS1305867

47.8

98.814

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.449

98.221

0.407

Multiple sequence alignment