Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ETT57_RS06800 Genome accession   NZ_CP035442
Coordinates   1306145..1306810 (-) Length   221 a.a.
NCBI ID   WP_111688422.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1301145..1311810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT57_RS06795 (ETT57_06785) raiA 1305517..1306065 (-) 549 WP_136048709.1 ribosome-associated translation inhibitor RaiA -
  ETT57_RS06800 (ETT57_06790) comFC/cflB 1306145..1306810 (-) 666 WP_111688422.1 ComF family protein Machinery gene
  ETT57_RS06805 (ETT57_06795) comFA/cflA 1306782..1308107 (-) 1326 WP_136048710.1 DEAD/DEAH box helicase Machinery gene
  ETT57_RS06810 (ETT57_06800) - 1308162..1308794 (+) 633 WP_136048711.1 YigZ family protein -
  ETT57_RS06815 (ETT57_06805) cysK 1308922..1309863 (+) 942 WP_009880467.1 cysteine synthase A -
  ETT57_RS06820 (ETT57_06810) - 1309881..1310258 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  ETT57_RS06825 (ETT57_06815) - 1310258..1311658 (-) 1401 WP_136048712.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25164.40 Da        Isoelectric Point: 9.3379

>NTDB_id=302336 ETT57_RS06800 WP_111688422.1 1306145..1306810(-) (comFC/cflB) [Streptococcus pyogenes strain emm25]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAADVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=302336 ETT57_RS06800 WP_111688422.1 1306145..1306810(-) (comFC/cflB) [Streptococcus pyogenes strain emm25]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTGATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412

Multiple sequence alignment