Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   DR994_RS00365 Genome accession   NZ_CP030927
Coordinates   63229..64368 (+) Length   379 a.a.
NCBI ID   WP_011680606.1    Uniprot ID   A0A0N8G956
Organism   Streptococcus thermophilus strain CS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 58229..69368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS00340 (DR994_00335) mutL 58229..60172 (+) 1944 WP_173940305.1 DNA mismatch repair endonuclease MutL -
  DR994_RS00345 (DR994_00340) - 60302..60523 (+) 222 WP_002949052.1 hypothetical protein -
  DR994_RS00350 (DR994_00345) ruvA 60675..61265 (+) 591 WP_002949053.1 Holliday junction branch migration protein RuvA -
  DR994_RS00355 (DR994_00350) - 61272..61826 (+) 555 WP_141327145.1 DNA-3-methyladenine glycosylase I -
  DR994_RS00360 (DR994_00355) cinA 61922..63193 (+) 1272 WP_084829277.1 competence/damage-inducible protein A Machinery gene
  DR994_RS00365 (DR994_00360) recA 63229..64368 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  DR994_RS00370 (DR994_00365) spx 64545..64943 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 40911.49 Da        Isoelectric Point: 4.8394

>NTDB_id=302337 DR994_RS00365 WP_011680606.1 63229..64368(+) (recA) [Streptococcus thermophilus strain CS9]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPEIFAEIDHKVRVHYGLIELDEDDVVEDTQVEDTSDELILDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=302337 DR994_RS00365 WP_011680606.1 63229..64368(+) (recA) [Streptococcus thermophilus strain CS9]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATCACAAAGAAGTTTGGTGATGAGCGTCGCAAAGCACTCGACGATGCATT
AAAAAACATTGAAAAAGATTTTGGTAAGGGTGCAGTTATGCGTCTTGGTGAGCGTGCAGAGCAAAAAGTTCAGGTTATGA
GCTCAGGCTCACTAGCTTTGGATATTGCTCTTGGTGCGGGTGGTTACCCTAAAGGTCGTATTATTGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTTGCCCTTCATGCAGTTGCTCAGACTCAAAAAGAAGGTGGCATCGCAGCTTTTATCGA
TGCCGAGCATGCTCTTGACCCTGCGTATGCAGCAGCTCTAGGTGTTAATATCGATGAGCTTCTTTTGTCGCAGCCTGATT
CTGGTGAGCAAGGTCTCGAAATTGCAGGTAAGCTGATTGACTCTGGTGCAGTGGATTTAGTTGTTGTTGACTCAGTTGCG
GCCTTGGTACCACGTGCAGAAATTGATGGAGATATTGGTGACAGTCATGTAGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAACTTTCTGCATCTATTAATAAAACAAAAACGATTGCTATCTTTATTAACCAGTTGCGTGAAAAAGTTGGTA
TCATGTTTGGTAACCCAGAGACTACCCCAGGTGGACGTGCTTTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGT
AATACACAAATTAAAGGAACCGGTGACAAAAAGGACCAAAATGTTGGTAAGGAAACCAAGATTAAGGTTGTTAAAAACAA
AGTTGCTCCACCATTTAAAGAAGCTTTTGTTGAAATTATGTATGGCGAAGGAATTTCACAAACCGGTGAACTTGTAAAAA
TTGCAAGTGATATAGGCATTATTCAGAAAGCCGGAGCTTGGTTCTCATATAATGGGGAGAAAATTGGTCAAGGATCTGAA
AATGCTAAAAAGTATTTAGCAGATCACCCTGAGATTTTTGCAGAAATCGATCATAAAGTACGCGTACACTACGGTCTGAT
TGAGCTAGATGAGGACGATGTTGTTGAAGATACACAAGTTGAAGACACGTCTGATGAACTCATTCTAGATCTTGATTCAA
CCATTGAAATCGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0N8G956

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

88.251

100

0.892

  recA Streptococcus pyogenes NZ131

89.182

100

0.892

  recA Streptococcus mitis SK321

86.352

100

0.868

  recA Streptococcus mitis NCTC 12261

86.352

100

0.868

  recA Streptococcus pneumoniae Rx1

84.935

100

0.863

  recA Streptococcus pneumoniae D39

84.935

100

0.863

  recA Streptococcus pneumoniae R6

84.935

100

0.863

  recA Streptococcus pneumoniae TIGR4

84.935

100

0.863

  recA Lactococcus lactis subsp. cremoris KW2

77.62

93.14

0.723

  recA Latilactobacillus sakei subsp. sakei 23K

66.575

95.515

0.636

  recA Bacillus subtilis subsp. subtilis str. 168

67.781

86.807

0.588

  recA Neisseria gonorrhoeae MS11

59.827

91.293

0.546

  recA Neisseria gonorrhoeae MS11

59.827

91.293

0.546

  recA Neisseria gonorrhoeae strain FA1090

59.827

91.293

0.546

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.177

89.446

0.538

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

85.224

0.533

  recA Glaesserella parasuis strain SC1401

59.412

89.71

0.533

  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533

  recA Acinetobacter baumannii D1279779

62.154

85.752

0.533

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

85.752

0.525

  recA Vibrio cholerae strain A1552

61.231

85.752

0.525

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.891

89.974

0.512

  recA Pseudomonas stutzeri DSM 10701

58.462

85.752

0.501

  recA Ralstonia pseudosolanacearum GMI1000

57.576

87.071

0.501

  recA Helicobacter pylori strain NCTC11637

56.667

87.071

0.493

  recA Helicobacter pylori 26695

56.667

87.071

0.493


Multiple sequence alignment