Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   DS746_RS07865 Genome accession   NZ_CP030888
Coordinates   1520497..1520808 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CS19     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1515497..1525808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS746_RS07845 (DS746_1543) ctsE 1516366..1517925 (-) 1560 WP_032588785.1 GspE/PulE family protein Machinery gene
  DS746_RS07850 (DS746_1544) ctsX 1517915..1518502 (-) 588 WP_002921278.1 hypothetical protein Machinery gene
  DS746_RS07855 (DS746_1545) ctsP 1518506..1519114 (-) 609 WP_002921280.1 ATP-binding protein Machinery gene
  DS746_RS07860 (DS746_1546) ctsD 1519107..1520519 (-) 1413 WP_259831614.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DS746_RS07865 (DS746_1547) ctsR 1520497..1520808 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  DS746_RS07870 (DS746_1548) nifJ 1520832..1524392 (-) 3561 WP_002921284.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  DS746_RS07875 (DS746_1549) - 1524485..1525126 (-) 642 WP_002921286.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=302099 DS746_RS07865 WP_002862131.1 1520497..1520808(-) (ctsR) [Campylobacter jejuni strain CS19]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=302099 DS746_RS07865 WP_002862131.1 1520497..1520808(-) (ctsR) [Campylobacter jejuni strain CS19]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment